Browse Element(s) Details


Os.10671.1.S1_at

Description gb:AK058284.1
DB_XREF= gi:32968302
TID=Os.10671.1
CNT=64
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.10671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative photosystem II subunit (22KDa) precursor (P0677H08.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D09, full insert sequence.
FL= gb:AK058284.1 gb:AK071827.1 gb:AK104275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6496011/11Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64910Os.36459.2.S1_x_at11/111+38009383..38010915UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g64920Os.31808.2.S1_x_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.2.S1_at11/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.31808.1.S1_at10/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64920Os.40235.1.S1_at1/111+38012908..38016291nuclear matrix protein 1, putative, expressed
LOC_Os01g64930Os.34638.1.S1_at10/111+38017149..38020006expressed protein
LOC_Os01g64940NANA1+38021191..38022534transposon protein, putative, unclassified
LOC_Os01g64949OsAffx.23902.2.S1_at11/111+38022947..38023270hypothetical protein
LOC_Os01g64960Os.10671.1.S1_at11/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64960Os.45428.1.S1_at1/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64970Os.12646.1.S1_at11/111+38037090..38041730Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os01g64980Os.32637.1.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.2.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.3.S1_x_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64990Os.46001.1.S1_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g64990OsAffx.2410.1.A1_x_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010196biological_processnonphotochemical quenching
GO:0009517cellular_componentPSII associated light-harvesting complex II
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10671.1.S1_at--1127--7951Chr01:38025832..38025856 (25 bp)
GGATCCCGATCTACGAGGCGGAGCC
LOC_Os01g64960
Os.10671.1.S1_at--759--3191Chr01:38026034..38026058 (25 bp)
CAAGGCCAACGAGCTGTTCGTCGGC
LOC_Os01g64960
Os.10671.1.S1_at--297--6951Chr01:38026256..38026280 (25 bp)
GTAGAATTACGAGGATCGATCGATC
LOC_Os01g64960
Os.10671.1.S1_at--1038--511Chr01:38026270..38026294 (25 bp)
ATCGATCGATCTACCGAGGTTTCGC
LOC_Os01g64960
Os.10671.1.S1_at--572--3711Chr01:38026280..38026304 (25 bp)
CTACCGAGGTTTCGCCGCCATTGTT
LOC_Os01g64960
Os.10671.1.S1_at--725--6631Chr01:38026302..38026326 (25 bp)
GTTGTGCTTGCGCATCATTGAGACT
LOC_Os01g64960
Os.10671.1.S1_at--367--9151Chr01:38026310..38026334 (25 bp)
TGCGCATCATTGAGACTTTCTTTCA
LOC_Os01g64960
Os.10671.1.S1_at--1075--5971Chr01:38026321..38026345 (25 bp)
GAGACTTTCTTTCAAGTGTATATGT
LOC_Os01g64960
Os.10671.1.S1_at--1001--9711Chr01:38026332..38026356 (25 bp)
TCAAGTGTATATGTACTGTGTACGT
LOC_Os01g64960
Os.10671.1.S1_at--1002--7771Chr01:38026356..38026380 (25 bp)
TGTAGGTGTAAAGACGTACCTTGTT
LOC_Os01g64960
Os.10671.1.S1_at--564--6631Chr01:38026387..38026411 (25 bp)
GTTGTTAATTAATGCCCATGGAGAA
LOC_Os01g64960
Target Sequence 
GGATCCCGATCTACGAGGCGGAGCCCCTCCTCCTCTTCTTCATCCTCTTCACCCTCCTCGGCGCCATCGGCGCGCTCGGC
GACCGCGGCAGCTTCGTCGACGACCAGCCGGTGACGGGCCTCGACAAGGCCGTCATCGCCCCGGGCAAGGGCTTCCGCTC
CGCGCTGGGCCTCAGCGAGGGCGGCCCGCTGTTCGGCTTCACCAAGGCCAACGAGCTGTTCGTCGGCCGGCTCGCGCAGC
TCGGCATCGCCTTCTCCATCATCGGCGAGATCATCACCGGCAAGGGCGCCCTCGCGCAGCTCAACATCGAGACCGGCGTC
CCCATCAACGAGATCGAGCCGCTCGTCCTCTTCAACGTCGTCTTCTTCTTCATCGCCGCCATCAACCCCGGCACCGGCAA
GTTCGTCAGCGACGACGACGAAGAGTAGAATTACGAGGATCGATCGATCTACCGAGGTTTCGCCGCCATTGTTGTGCTTG
CGCATCATTGAGACTTTCTTTCAAGTGTATATGTACTGTGTACGTGTAGGTGTAAAGACGTACCTTGTTTAATTAGTTGT
TAATTAATGCCCATGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10671.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis