Browse Element(s) Details


Os.32637.3.S1_x_at

Description gb:NM_190787.1
DB_XREF= gi:34908657
GEN=P0677H08.29
TID=Os.32637.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0677H08.29 (P0677H08.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0677H08.29 (P0677H08.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6498011/11Ion channel DMI1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64930Os.34638.1.S1_at10/111+38017149..38020006expressed protein
LOC_Os01g64940NANA1+38021191..38022534transposon protein, putative, unclassified
LOC_Os01g64949OsAffx.23902.2.S1_at11/111+38022947..38023270hypothetical protein
LOC_Os01g64960Os.10671.1.S1_at11/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64960Os.45428.1.S1_at1/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64970Os.12646.1.S1_at11/111+38037090..38041730Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os01g64980Os.32637.1.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.2.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.3.S1_x_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64990Os.46001.1.S1_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g64990OsAffx.2410.1.A1_x_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g65000Os.25771.1.S1_at9/111+38062129..38064490Ammonium transporter 2, putative, expressed
LOC_Os01g65010OsAffx.29815.1.S1_x_at1/111+38066314..38069570D-mannose binding lectin family protein, expressed
LOC_Os01g65030Os.52175.1.S1_at11/111+38072375..38075424D-mannose binding lectin family protein, expressed
LOC_Os01g65030OsAffx.11739.1.S1_x_at2/111+38072375..38075424D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32637.3.S1_x_at--945--10271Chr01:38043977..38044001 (25 bp)
TTTGCCTCTGGAGACATTCGATTCT
LOC_Os01g64980
Os.32637.3.S1_x_at--40--8031Chr01:38043535..38043559 (25 bp)
GGAGGATTCCATCGTACATTCTGAT
LOC_Os01g64980
Os.32637.3.S1_x_at--305--6571Chr01:38043513..38043537 (25 bp)
GATTCACGTTCTTTAGCTACACTTC
LOC_Os01g64980
Os.32637.3.S1_x_at--1118--2031Chr01:38043493..38043517 (25 bp)
ACTTCTTCTAATTCGCGACATTCAG
LOC_Os01g64980
Os.32637.3.S1_x_at--559--2071Chr01:38043395..38043446 (25 bp)
ACATTCAGTCTAAACGTCTTCCATC
LOC_Os01g64980
Os.32637.3.S1_x_at--160--8171Chr01:38043367..38043391 (25 bp)
GGAACTAAAATCACCTCTGCGTTAC
LOC_Os01g64980
Os.32637.3.S1_x_at--324--6771Chr01:38043347..38043371 (25 bp)
GTTACAATGGCTTCTGTCACAGCTC
LOC_Os01g64980
Os.32637.3.S1_x_at--687--7091Chr01:38043332..38043356 (25 bp)
GTCACAGCTCCTGGATTCGGGAGAT
LOC_Os01g64980
Os.32637.3.S1_x_at--677--5551Chr01:38043251..38043275 (25 bp)
GAAACCTTGTATCTGTCTCCAAAAT
LOC_Os01g64980
Os.32637.3.S1_x_at--207--6271Chr01:38042935..38042959 (25 bp)
GATGTGCATACGTTCAGCTGAGTTT
LOC_Os01g64980
Os.32637.3.S1_x_at--45--5771Chr01:38042850..38042874 (25 bp)
GACGAGGTTGTCATTGGCTACCGCC
LOC_Os01g64980
Target Sequence 
TTTGCCTCTGGAGACATTCGATTCTATTTTAATTCTTGCAGATGAGTCAGTGGAGGATTCCATCGTACATTCTGATTCAC
GTTCTTTAGCTACACTTCTTCTAATTCGCGACATTCAGTCTAAACGTCTTCCATCAAAGGAACTAAAATCACCTCTGCGT
TACAATGGCTTCTGTCACAGCTCCTGGATTCGGGAGATGCAGCACGCATCAGATAAATCAATAATTATCAGTGAAATTCT
GGATTCCAGAACCAGAAACCTTGTATCTGTCTCCAAAATCAGCGACTATGTTCTATCAAATGAACTTGTCAGCATGGCAT
TAGCAATGGTAGCAGAGGACAAACAAATCAACAGAGTTCTTGAAGAACTTTTTGCCGAGGAGGGCAACGAGATGTGCATA
CGTTCAGCTGAGTTTTACCTCTATGAGCAAGAGGAATTGAGTTTCTTTGATATAATGGTCAGGGCTCGTGAAAGAGACGA
GGTTGTCATTGGCTACCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32637.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis