Browse Element(s) Details

Os.47313.1.A1_at

Description

gb:AB004461.1
DB_XREF= gi:2826899
TID=Os.47313.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47313 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for DNA polymerase alpha catalytic subunit, complete cds.
PROD=DNA polymerase alpha catalytic subunit
FL= gb:AB004461.1 gb:AK103345.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g64820	10/11	DNA polymerase alpha catalytic subunit, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g64810	Os.8978.1.S1_a_at	11/11	1	+	37942805..37948944	DHHC zinc finger domain containing protein, expressed
LOC_Os01g64810	Os.8978.3.S1_x_at	11/11	1	+	37942805..37948944	DHHC zinc finger domain containing protein, expressed
LOC_Os01g64810	Os.8978.2.S1_at	11/11	1	+	37942805..37948944	DHHC zinc finger domain containing protein, expressed
LOC_Os01g64820	OsAffx.9523.1.S1_x_at	11/11	1	+	37952644..37961025	DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64820	Os.47313.1.A1_at	10/11	1	+	37952644..37961025	DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64830	OsAffx.11734.2.S1_x_at	11/11	1	+	37964061..37966714	Eukaryotic aspartyl protease family protein
LOC_Os01g64830	OsAffx.11734.2.S1_at	11/11	1	+	37964061..37966714	Eukaryotic aspartyl protease family protein
LOC_Os01g64830	OsAffx.11734.3.S1_at	10/11	1	+	37964061..37966714	Eukaryotic aspartyl protease family protein
LOC_Os01g64830	OsAffx.11734.1.S1_at	1/11	1	+	37964061..37966714	Eukaryotic aspartyl protease family protein
LOC_Os01g64840	OsAffx.11734.1.S1_at	11/11	1	+	37968421..37969887	Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64840	OsAffx.11734.2.S1_x_at	1/11	1	+	37968421..37969887	Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64850	OsAffx.9521.1.S1_at	11/11	1	+	37973868..37976141	Subtilisin N-terminal Region family protein
LOC_Os01g64860	Os.17663.1.S1_at	11/11	1	+	37978683..37981230	Subtilisin N-terminal Region family protein, expressed
LOC_Os01g64870	Os.8109.1.S1_a_at	11/11	1	+	37982293..37988083	expressed protein
LOC_Os01g64870	Os.8109.1.S2_a_at	11/11	1	+	37982293..37988083	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0003887	molecular_function	DNA-directed DNA polymerase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.47313.1.A1_at--297--869	1	Chr01:37952971..37952995 (25 bp)	TGTCCTTTGTAAACGTCAACCCTCA	LOC_Os01g64820
Os.47313.1.A1_at--385--709	1	Chr01:37952957..37952981 (25 bp)	GTCAACCCTCAAATATCGGTGAATG	LOC_Os01g64820
Os.47313.1.A1_at--1144--519	1	Chr01:37952926..37952950 (25 bp)	GAATTCCTCATAGGACGTGCAACGT	LOC_Os01g64820
Os.47313.1.A1_at--285--811	1	Chr01:37952914..37952938 (25 bp)	GGACGTGCAACGTTGTGTTCTTGTG	LOC_Os01g64820
Os.47313.1.A1_at--192--271	1	Chr01:37952883..37952907 (25 bp)	AAGCTACATCACATGCTGAGTTGCA	LOC_Os01g64820
Os.47313.1.A1_at--120--475	1	Chr01:37952869..37952893 (25 bp)	GCTGAGTTGCAGACATCCAAATTAC	LOC_Os01g64820
Os.47313.1.A1_at--382--773	1	Chr01:37952821..37952845 (25 bp)	GGTGTTTCTCAACCTGTAAAGTACA	LOC_Os01g64820
Os.47313.1.A1_at--75--31	1	Chr01:37952759..37952783 (25 bp)	ATAGCTGTTGCTTGGGAGCAGACCC	LOC_Os01g64820
Os.47313.1.A1_at--697--151	1	Chr01:37952743..37952767 (25 bp)	AGCAGACCCAGATGAGTACCTTTCG	LOC_Os01g64820
Os.47313.1.A1_at--1045--695	1	NONE	GTACCTTTCGTAGTGTTATTTAGTG	NONE
Os.47313.1.A1_at--710--735	1	Chr01:37952703..37952727 (25 bp)	GTGAATGTACCATGCTAAACTTGTA	LOC_Os01g64820

Target Sequence

TGTCCTTTGTAAACGTCAACCCTCAAATATCGGTGAATGAGCTAAGAATTCCTCATAGGACGTGCAACGTTGTGTTCTTG
TGTTGTAGAAGCTACATCACATGCTGAGTTGCAGACATCCAAATTACAAGATAGTAGGCTGTTCCGTGANGGGTGTTTCT
CAACCTGTAAAGTACAGAANTTTTCGTAGTATANTTTCATTTGAATTCNNAAATGTTATAGCTGTTGCTTGGGAGCAGAC
CCAGATGAGTACCTTTCGTAGTGTTATTTAGTGAGTGAATGTACCATGCTAAACTTGTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis