Browse Element(s) Details


Os.8978.3.S1_x_at

Description gb:NM_190771.1
DB_XREF= gi:34908625
GEN=P0677H08.13
TID=Os.8978.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8978 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0677H08.13 (P0677H08.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0677H08.13 (P0677H08.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6481011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64790NANA1+37916627..37919295AP2 domain containing protein, expressed
LOC_Os01g64800NANA1+37921920..37922189hypothetical protein
LOC_Os01g64810Os.8978.1.S1_a_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64810Os.8978.3.S1_x_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64810Os.8978.2.S1_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64820OsAffx.9523.1.S1_x_at11/111+37952644..37961025DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64820Os.47313.1.A1_at10/111+37952644..37961025DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64830OsAffx.11734.2.S1_x_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.2.S1_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.3.S1_at10/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.1.S1_at1/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64840OsAffx.11734.1.S1_at11/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64840OsAffx.11734.2.S1_x_at1/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64850OsAffx.9521.1.S1_at11/111+37973868..37976141Subtilisin N-terminal Region family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8978.3.S1_x_at--764--4191Chr01:37946245..37946269 (25 bp)
CCCTGCTTCTCTTGCATTACTAATA
LOC_Os01g64810
Os.8978.3.S1_x_at--785--6831Chr01:37946216..37946240 (25 bp)
GTTTCATCTGTCTTTGGTTTGTTGG
LOC_Os01g64810
Os.8978.3.S1_x_at--835--6611Chr01:37946196..37946220 (25 bp)
GTTGGTGGACTCACAGGATTTCATA
LOC_Os01g64810
Os.8978.3.S1_x_at--227--5511Chr01:37944479..37944503 (25 bp)
GAAAATTTCCGGTACAGAGCAGATG
LOC_Os01g64810
Os.8978.3.S1_x_at--1012--7131Chr01:37944407..37944431 (25 bp)
GTCTTCTATACTAAGGTTCCACCTT
LOC_Os01g64810
Os.8978.3.S1_x_at--981--4311Chr01:37944270..37944294 (25 bp)
CCTTGACATAGGTGGTGATCTCTTG
LOC_Os01g64810
Os.8978.3.S1_x_at--518--6211Chr01:37944173..37944197 (25 bp)
GAGGCTGTCTCAAACTCCAAATTGA
LOC_Os01g64810
Os.8978.3.S1_x_at--290--7991Chr01:37944138..37944162 (25 bp)
GGATGCACAAGCTCCTACAGTGGAA
LOC_Os01g64810
Os.8978.3.S1_x_at--1101--1291Chr01:37944114..37944138 (25 bp)
AGATGAGGTACAGCACCCGAGTCGG
LOC_Os01g64810
Os.8978.3.S1_x_at--595--5331Chr01:37944082..37944106 (25 bp)
GAAGTCGAAGTTCGGACCTCGCATC
LOC_Os01g64810
Os.8978.3.S1_x_at--1027--8271Chr01:37944053..37944077 (25 bp)
GGCATCACAACAAGTGCTCCAGTCT
LOC_Os01g64810
Target Sequence 
CCCTGCTTCTCTTGCATTACTAATATATTGTTTCATCTGTCTTTGGTTTGTTGGTGGACTCACAGGATTTCATACATATC
TCATCAGCACAAACCAGACCACATATGAAAATTTCCGGTACAGAGCAGATGGCAGACCAAATGCCTATGATCGAGGATGT
ATGAATAACTTTCTAGAAGTCTTCTATACTAAGGTTCCACCTTCCAAACACAAGTTCAGGGAACCTATACAAGAGGAAGC
GCGAGCTCCACCAGCTAACCGTGCTGTGGAGAGAGAAGAAGAGCCGGTTGGTGCTCGGACAAAAGTGGAAGATGACCTTG
ACATAGGTGGTGATCTCTTGAAGATCTCACAACGACATAATTATGATGGCATTGATATTGAAATGGGAGGTGGAGACAGA
AATAGTAGGAATGAGGCTGTCTCAAACTCCAAATTGATATCAAAGACGGATGCACAAGCTCCTACAGTGGAAGATGAGGT
ACAGCACCCGAGTCGGGGTGAAAGAAGTCGAAGTTCGGACCTCGCATCAGAAGGCATCACAACAAGTGCTCCAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8978.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis