Browse Element(s) Details


Os.8978.2.S1_at

Description gb:AK119393.1
DB_XREF= gi:37989016
TID=Os.8978.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8978 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0677H08.13 (P0677H08.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-D02, full insert sequence.
FL= gb:AK119393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6481011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64790NANA1+37916627..37919295AP2 domain containing protein, expressed
LOC_Os01g64800NANA1+37921920..37922189hypothetical protein
LOC_Os01g64810Os.8978.1.S1_a_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64810Os.8978.3.S1_x_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64810Os.8978.2.S1_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64820OsAffx.9523.1.S1_x_at11/111+37952644..37961025DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64820Os.47313.1.A1_at10/111+37952644..37961025DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64830OsAffx.11734.2.S1_x_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.2.S1_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.3.S1_at10/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.1.S1_at1/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64840OsAffx.11734.1.S1_at11/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64840OsAffx.11734.2.S1_x_at1/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64850OsAffx.9521.1.S1_at11/111+37973868..37976141Subtilisin N-terminal Region family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8978.2.S1_at--232--5891Chr01:37943348..37943372 (25 bp)
GAGCTGCCTTTTGAATGCTGGTCGT
LOC_Os01g64810
Os.8978.2.S1_at--327--4511Chr01:37943323..37943347 (25 bp)
GCCGTTGTTCTACTGGAATCCTGTA
LOC_Os01g64810
Os.8978.2.S1_at--1149--10511Chr01:37943255..37943279 (25 bp)
TTCAGACTTCTGCATTGGACTCACT
LOC_Os01g64810
Os.8978.2.S1_at--741--9831Chr01:37943203..37943227 (25 bp)
TAAATGCCGAACTCCGAAGACCTTA
LOC_Os01g64810
Os.8978.2.S1_at--412--5831Chr01:37943185..37943209 (25 bp)
GACCTTAAGGTTGTCTTCTCTGTAT
LOC_Os01g64810
Os.8978.2.S1_at--99--5851Chr01:37943068..37943092 (25 bp)
GACCACGACATCTCAGTTACTATCT
LOC_Os01g64810
Os.8978.2.S1_at--111--3491Chr01:37943036..37943060 (25 bp)
CAGGAGCGTTTGATGCCTCTGATAA
LOC_Os01g64810
Os.8978.2.S1_at--381--9831Chr01:37943014..37943038 (25 bp)
TAAAACGCCATTGCTGTCTGTCAGA
LOC_Os01g64810
Os.8978.2.S1_at--392--2991Chr01:37942984..37943008 (25 bp)
AATGTTGACCCAAGAGTCGTCGCGT
LOC_Os01g64810
Os.8978.2.S1_at--600--4011Chr01:37942967..37942991 (25 bp)
CGTCGCGTCGCATGGGATATCAATT
LOC_Os01g64810
Os.8978.2.S1_at--769--6111Chr01:37942890..37942914 (25 bp)
GAGTGCACTTTCATTGTCTTCCTTT
LOC_Os01g64810
Target Sequence 
GAGCTGCCTTTTGAATGCTGGTCGTGCCGTTGTTCTACTGGAATCCTGTAATCAATGATATGGCGACATCGATCCCTCTC
GTTGGCTTCTGGATTCAGACTTCTGCATTGGACTCACTCTAGCTGAGACTGGAAGCATCTCCTGGTAAATGCCGAACTCC
GAAGACCTTAAGGTTGTCTTCTCTGTATGGTTTTGCAACCCAGAGAAAATTTGCAGCTGTGATGTTGTAGATATCTTAAT
TGTCTCGTGGTTACCAAAGTTCAGTTTGGTGCAAAAATTTGACCACGACATCTCAGTTACTATCTGCATTTTCAGGAGCG
TTTGATGCCTCTGATAAAACGCCATTGCTGTCTGTCAGAAATGGAATGTTGACCCAAGAGTCGTCGCGTCGCATGGGATA
TCAATTTGACGCTGACATTGCGTATGCTGGTGATAATGCGTTAGAGCGTCAGTCAGTGGAGTGCACTTTCATTGTCTTCC
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8978.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis