Browse Element(s) Details


OsAffx.11734.2.S1_at

Description gb:NM_190773.1
DB_XREF= gi:34908629
GEN=P0677H08.15
TID=OsAffx.11734.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative chloroplast nucleoid DNA-binding protein (P0677H08.15), mRNA.
PROD=putative chloroplast nucleoid DNA-bindingprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6483011/11Eukaryotic aspartyl protease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64810Os.8978.1.S1_a_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64810Os.8978.3.S1_x_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64810Os.8978.2.S1_at11/111+37942805..37948944DHHC zinc finger domain containing protein, expressed
LOC_Os01g64820OsAffx.9523.1.S1_x_at11/111+37952644..37961025DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64820Os.47313.1.A1_at10/111+37952644..37961025DNA polymerase alpha catalytic subunit, putative, expressed
LOC_Os01g64830OsAffx.11734.2.S1_x_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.2.S1_at11/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.3.S1_at10/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64830OsAffx.11734.1.S1_at1/111+37964061..37966714Eukaryotic aspartyl protease family protein
LOC_Os01g64840OsAffx.11734.1.S1_at11/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64840OsAffx.11734.2.S1_x_at1/111+37968421..37969887Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g64850OsAffx.9521.1.S1_at11/111+37973868..37976141Subtilisin N-terminal Region family protein
LOC_Os01g64860Os.17663.1.S1_at11/111+37978683..37981230Subtilisin N-terminal Region family protein, expressed
LOC_Os01g64870Os.8109.1.S1_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64870Os.8109.1.S2_a_at11/111+37982293..37988083expressed protein
LOC_Os01g64880OsAffx.11735.1.S1_at11/111+37988627..37989282expressed protein
LOC_Os01g64890Os.5643.1.S1_at11/111+37991082..37994186CorA-like Mg2+ transporter protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11734.2.S1_at--518--9351Chr01:37965373..37965397 (25 bp)
TCGAATCGTTGGAGCAAGCGCCGCC
LOC_Os01g64830
OsAffx.11734.2.S1_at--524--4111Chr01:37965374..37965398 (25 bp)
CGAATCGTTGGAGCAAGCGCCGCCG
LOC_Os01g64830
OsAffx.11734.2.S1_at--859--7671Chr01:37965407..37965431 (25 bp)
GGGTTCATCCCGACAGTCGTCACGG
LOC_Os01g64830
OsAffx.11734.2.S1_at--906--6711Chr01:37965409..37965433 (25 bp)
GTTCATCCCGACAGTCGTCACGGCG
LOC_Os01g64830
OsAffx.11734.2.S1_at--780--5831Chr01:37965461..37965485 (25 bp)
GACCTCGCCGGCAGTGGTCGTGATC
LOC_Os01g64830
OsAffx.11734.2.S1_at--997--3791Chr01:37965464..37965488 (25 bp)
CTCGCCGGCAGTGGTCGTGATCCAT
LOC_Os01g64830
OsAffx.11734.2.S1_at--42--4491Chr01:37965467..37965491 (25 bp)
GCCGGCAGTGGTCGTGATCCATTTA
LOC_Os01g64830
OsAffx.11734.2.S1_at--1027--4251Chr01:37965468..37965492 (25 bp)
CCGGCAGTGGTCGTGATCCATTTAA
LOC_Os01g64830
OsAffx.11734.2.S1_at--60--3951Chr01:37965469..37965493 (25 bp)
CGGCAGTGGTCGTGATCCATTTAAT
LOC_Os01g64830
OsAffx.11734.2.S1_at--734--5011Chr01:37965471..37965495 (25 bp)
GCAGTGGTCGTGATCCATTTAATGT
LOC_Os01g64830
OsAffx.11734.2.S1_at--229--7491Chr01:37965474..37965498 (25 bp)
GTGGTCGTGATCCATTTAATGTTGG
LOC_Os01g64830
Target Sequence 
TCGAATCGTTGGAGCAAGCGCCGCCGCCGCCGTCGGGTTCATCCCGACAGTCGTCACGGCGGCGCTCATCGTCAGCCCCG
CCGCCGCTGACCTCGCCGGCAGTGGTCGTGATCCATTTAATGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11734.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis