Browse Element(s) Details


OsAffx.4991.1.S1_at

Description tigr:9634.m03141
TID=OsAffx.4991.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT003112 At5g53160
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3349011/11CAPIP1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33450OsAffx.4988.1.S1_at10/116+19487393..19493211Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g33450OsAffx.2630.1.S1_x_at1/116+19487393..19493211Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g33460OsAffx.4989.1.S1_at11/116+19494981..19495397hypothetical protein
LOC_Os06g33470OsAffx.4990.1.S1_at11/116+19499408..19502109expressed protein
LOC_Os06g33470OsAffx.24962.1.S1_at1/116+19499408..19502109expressed protein
LOC_Os06g33480Os.35524.1.S2_at1/116+19502410..19505419CAPIP1, putative
LOC_Os06g33490OsAffx.4991.1.S1_at11/116+19507721..19510237CAPIP1, putative
LOC_Os06g33499NANA6+19511072..19511723NA
LOC_Os06g33510OsAffx.4992.1.S1_at11/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33510Os.54774.1.S1_x_at2/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33510Os.54774.1.S1_at2/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33520OsAffx.27916.1.S1_at11/116+19515633..19523705DEAD box RNA helicase, putative, expressed
LOC_Os06g33530OsAffx.4993.1.S1_at11/116+19525784..19528695Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549OsAffx.15713.1.S1_s_at11/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549Os.46761.1.S1_at11/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549Os.52702.1.S1_at9/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549OsAffx.1436.1.S1_x_at2/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549Os.51348.1.S1_x_at2/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549OsAffx.9036.1.S1_at2/116+19530565..19541007Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4991.1.S1_at--695--8551Chr06:19510095..19510119 (25 bp)
TGGAGTACGTGCGATGGTTCCACCG
LOC_Os06g33490
OsAffx.4991.1.S1_at--94--831Chr06:19510082..19510106 (25 bp)
ATGGTTCCACCGCTATGAGCTCGTT
LOC_Os06g33490
OsAffx.4991.1.S1_at--861--10111Chr06:19510069..19510093 (25 bp)
TATGAGCTCGTTGCAACCGGTGCAA
LOC_Os06g33490
OsAffx.4991.1.S1_at--145--3651Chr06:19510041..19510065 (25 bp)
CTTCGTTGCCAAACACATCAGGGTG
LOC_Os06g33490
OsAffx.4991.1.S1_at--739--391Chr06:19510029..19510049 (21 bp)
ATCAGGGTGCCCCTCTAAACTTGGG
LOC_Os06g33490
OsAffx.4991.1.S1_at--182--6291Chr06:19508320..19508344 (25 bp)
GATGATAATGATCACACCCTCCGTG
LOC_Os06g33490
OsAffx.4991.1.S1_at--1148--2151Chr06:19508307..19508331 (25 bp)
ACACCCTCCGTGTCAAGTTTATTGG
LOC_Os06g33490
OsAffx.4991.1.S1_at--1034--7731Chr06:19508287..19508308 (22 bp)
GGTGGTGATCACATGCTAAAGGACT
LOC_Os06g33490
OsAffx.4991.1.S1_at--183--951Chr06:19507866..19507890 (25 bp)
AGGACTACTCATCCACCTTGATTAT
LOC_Os06g33490
OsAffx.4991.1.S1_at--275--10431Chr06:19507845..19507869 (25 bp)
TTATCCACTTGGAGGTCATCGATGG
LOC_Os06g33490
OsAffx.4991.1.S1_at--1095--511Chr06:19507828..19507852 (25 bp)
ATCGATGGCCAGCTAGTAACACTAG
LOC_Os06g33490
Target Sequence 
TGGAGTACGTGCGATGGTTCCACCGCTATGAGCTCGTTGCAACCGGTGCAACTCCTTCGTTGCCAAACACATCAGGGTGC
CCCTCTAAACTTGGGCTCCCATCCACAAGGAGAATTGAAAGGTTAGGGTTCCCTGATGATAATGATCACACCCTCCGTGT
CAAGTTTATTGGTGGTGATCACATGCTAAAGGACTACTCATCCACCTTGATTATCCACTTGGAGGTCATCGATGGCCAGC
TAGTAACACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis