Browse Element(s) Details


OsAffx.4993.1.S1_at

Description tigr:9634.m03145
TID=OsAffx.4993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein phosphatase 2C, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3353011/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33470OsAffx.4990.1.S1_at11/116+19499408..19502109expressed protein
LOC_Os06g33470OsAffx.24962.1.S1_at1/116+19499408..19502109expressed protein
LOC_Os06g33480Os.35524.1.S2_at1/116+19502410..19505419CAPIP1, putative
LOC_Os06g33490OsAffx.4991.1.S1_at11/116+19507721..19510237CAPIP1, putative
LOC_Os06g33499NANA6+19511072..19511723NA
LOC_Os06g33510OsAffx.4992.1.S1_at11/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33510Os.54774.1.S1_x_at2/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33510Os.54774.1.S1_at2/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33520OsAffx.27916.1.S1_at11/116+19515633..19523705DEAD box RNA helicase, putative, expressed
LOC_Os06g33530OsAffx.4993.1.S1_at11/116+19525784..19528695Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549OsAffx.15713.1.S1_s_at11/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549Os.46761.1.S1_at11/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549Os.52702.1.S1_at9/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549OsAffx.1436.1.S1_x_at2/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549Os.51348.1.S1_x_at2/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549OsAffx.9036.1.S1_at2/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33570Os.20835.1.S1_at11/116+19543603..19552017Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33570Os.50135.1.S1_at4/116+19543603..19552017Cyclic nucleotide-gated ion channel 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4993.1.S1_at--915--2391Chr06:19527921..19527945 (25 bp)
AAAAACCTCGTGAAGCATCCTAAGT
LOC_Os06g33530
OsAffx.4993.1.S1_at--1043--6691Chr06:19527898..19527922 (25 bp)
GTTCCTGAAAGACACAAAGCTCGCT
LOC_Os06g33530
OsAffx.4993.1.S1_at--45--3631Chr06:19527855..19527878 (24 bp)
CTTCATTTCGGCTGTACCTCTTCTA
LOC_Os06g33530
OsAffx.4993.1.S1_at--416--9911Chr06:19527772..19527864 (25 bp)
TACCTCTTCTACCAAACGTTTCTGA
LOC_Os06g33530
OsAffx.4993.1.S1_at--1120--5791Chr06:19527742..19527766 (25 bp)
GACGCTGATTTCCTACAGTCGATAT
LOC_Os06g33530
OsAffx.4993.1.S1_at--284--6511Chr06:19527722..19527746 (25 bp)
GATATCTTCTGATCGTTATAGGGAT
LOC_Os06g33530
OsAffx.4993.1.S1_at--183--2491Chr06:19527689..19527713 (25 bp)
AACAGCAGTGGCTGCCATTTTGATT
LOC_Os06g33530
OsAffx.4993.1.S1_at--1019--10851Chr06:19527666..19527690 (25 bp)
TTGGCAACCGCCTATATGTAGCTAA
LOC_Os06g33530
OsAffx.4993.1.S1_at--206--6571Chr06:19527634..19527658 (25 bp)
GATTCACGTGCCGTTGCTCTAAAAG
LOC_Os06g33530
OsAffx.4993.1.S1_at--399--851Chr06:19527084..19527108 (25 bp)
ATGGAATTCTGGCAGTGTCCCGTGC
LOC_Os06g33530
OsAffx.4993.1.S1_at--95--5151Chr06:19527054..19527078 (25 bp)
GCAATCGTTTAATGAAGCGCTATGT
LOC_Os06g33530
Target Sequence 
AAAAACCTCGTGAAGCATCCTAAGTTCCTGAAAGACACAAAGCTCGCTATAAGTAATGTTTTTTCCCCTTCATTTCGGCT
GTACCTCTTCTACCAAACGTTTCTGAAAACTGACGCTGATTTCCTACAGTCGATATCTTCTGATCGTTATAGGGATGATG
GTTCAACAGCAGTGGCTGCCATTTTGATTGGCAACCGCCTATATGTAGCTAATGTTGGTGATTCACGTGCCGTTGCTCTA
AAAGCCGGAAAAGCTGTCCCACTGTCTGAAGATCACAAACCTAACAAAAAAGATGAGCGAAAGAGAATTGAGGATGCTGG
AGGCATTGTTGTTTCAGATGATATATGGAGGGTTGATGGAATTCTGGCAGTGTCCCGTGCATTTGGCAATCGTTTAATGA
AGCGCTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis