Browse Element(s) Details


Os.52702.1.S1_at

Description gb:AK068820.1
DB_XREF= gi:32978845
TID=Os.52702.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013164O07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013164O07, full insert sequence.
FL= gb:AK068820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1133011/11expressed protein
LOC_Os06g335499/11Protein phosphatase 2C containing protein, expressed
LOC_Os02g260145/11Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os04g107243/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11300NANA11+6265679..6269335retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11310NANA11+6270916..6271251hypothetical protein
LOC_Os11g11320Os.16593.1.S1_at11/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11320OsAffx.7533.1.S1_x_at1/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11320OsAffx.7533.1.S1_at1/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11330Os.52702.1.S1_at11/1111+6281233..6283457expressed protein
LOC_Os11g11330Os.36607.2.S1_x_at1/1111+6281233..6283457expressed protein
LOC_Os11g11330OsAffx.27750.1.S1_x_at1/1111+6281233..6283457expressed protein
LOC_Os11g11340Os.7334.1.A1_at11/1111+6284373..6290628ATPase, AAA family protein, expressed
LOC_Os11g11340Os.56263.1.S1_at11/1111+6284373..6290628ATPase, AAA family protein, expressed
LOC_Os11g11350OsAffx.7076.1.S1_at11/1111+6292017..6296343expressed protein
LOC_Os11g11360OsAffx.30927.1.S1_at11/1111+6302316..6303143embryogenesis transmembrane protein, putative
LOC_Os11g11370Os.6226.1.S1_at11/1111+6303982..6306264expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52702.1.S1_at--387--90174Chr12:9969714..9969738 (25 bp)
TGCACACTTACGTGGCGAAAAGCAA
NONE
Os.52702.1.S1_at--528--475254Chr12:6171348..6171372 (25 bp)
GCTTTACTGTTTGACACCTTTTAAG
NONE
Os.52702.1.S1_at--830--785250Chr12:5366635..5366659 (25 bp)
GGTATTGGGCACTTGATCACGCGCA
NONE
Os.52702.1.S1_at--406--39217Chr12:6171443..6171467 (25 bp)
ATCACGCGCACTTTGGCCTAAGCAA
NONE
Os.52702.1.S1_at--383--167240Chr12:8547195..8547219 (25 bp)
TATGCCTTCGACACCCTTTAAAGGA
NONE
Os.52702.1.S1_at--61--57750Chr12:9970051..9970075 (25 bp)
GACGCATATAACATGCTCCCGAGTA
NONE
Os.52702.1.S1_at--792--70741Chr12:9970089..9970113 (25 bp)
GTAATATAGACCAAGCGTAGCTCAT
NONE
Os.52702.1.S1_at--461--49128Chr12:9970121..9970145 (25 bp)
GCTTCTGATCTGAGTGGTTATCCCT
NONE
Os.52702.1.S1_at--95--875202Chr12:11563119..11563143 (25 bp)
TGTAACAATTGAATCCCGACTGGCG
NONE
Os.52702.1.S1_at--589--92968Chr12:11563132..11563156 (25 bp)
TCCCGACTGGCGCAAGTATTCAGTT
NONE
Os.52702.1.S1_at--108--67556Chr12:9970195..9970219 (25 bp)
GTATTCAGTTGATAACCCTTACGGG
NONE
Target Sequence 
TGCACACTTACGTGGCGAAAAGCAATGATATTGTATCCAATCAATTGCTTAAAAACTCAAACAGCACCTTGAATTATATA
TAAAAAAGTCAGCGGGACAGCTATATAAAGCTTTACTGTTTGACACCTTTTAAGATGCATTGTATCAACTCCTAAAAAGT
TAAGTAACTGCGGTATAAAAGGATTTTAAGGTATTGGGCACTTGATCACGCGCACTTTGGCCTAAGCAAAAAGTGCCTAA
GTCCCTAAAAGAACGTGACAGGCCACACCTGAAAATATGGGCTGCAGACATATTAGGCCTAGGCCAAAACATATGCCTTC
GACACCCTTTAAAGGATGACGCATATAACATGCTCCCGAGTAATAAATCTTCCGGGTAATATAGACCAAGCGTAGCTCAT
ATGAATAGCTTCTGATCTGAGTGGTTATCCCTTATGGGATACTCCAAAATAGATGTAACAATTGAATCCCGACTGGCGCA
AGTATTCAGTTGATAACCCTTACGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis