Browse Element(s) Details


OsAffx.30927.1.S1_at

Description tigr:9639.m01079
TID=OsAffx.30927.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=137718 embryogenesis transmembrane protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1136011/11embryogenesis transmembrane protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11320Os.16593.1.S1_at11/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11320OsAffx.7533.1.S1_x_at1/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11320OsAffx.7533.1.S1_at1/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11330Os.52702.1.S1_at11/1111+6281233..6283457expressed protein
LOC_Os11g11330Os.36607.2.S1_x_at1/1111+6281233..6283457expressed protein
LOC_Os11g11330OsAffx.27750.1.S1_x_at1/1111+6281233..6283457expressed protein
LOC_Os11g11340Os.7334.1.A1_at11/1111+6284373..6290628ATPase, AAA family protein, expressed
LOC_Os11g11340Os.56263.1.S1_at11/1111+6284373..6290628ATPase, AAA family protein, expressed
LOC_Os11g11350OsAffx.7076.1.S1_at11/1111+6292017..6296343expressed protein
LOC_Os11g11360OsAffx.30927.1.S1_at11/1111+6302316..6303143embryogenesis transmembrane protein, putative
LOC_Os11g11370Os.6226.1.S1_at11/1111+6303982..6306264expressed protein
LOC_Os11g11380OsAffx.19542.3.S1_x_at5/1111+6310590..6314320retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11390Os.10134.1.S1_at11/1111+6316734..631941460S ribosomal protein L10-1, putative, expressed
LOC_Os11g11390Os.11021.2.S1_x_at5/1111+6316734..631941460S ribosomal protein L10-1, putative, expressed
LOC_Os11g11400OsAffx.18798.1.S1_at11/1111+6327183..6327572hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30927.1.S1_at--507--1131Chr11:6302824..6302848 (25 bp)
AGTCCTCCTTAACAACGTTTGCGAT
LOC_Os11g11360
OsAffx.30927.1.S1_at--1107--10071Chr11:6302767..6302791 (25 bp)
TAGGGATATTAGCAGCAACCGCCAC
LOC_Os11g11360
OsAffx.30927.1.S1_at--656--5611Chr11:6302702..6302726 (25 bp)
GACAACGATGATGGACACTCCGCCG
LOC_Os11g11360
OsAffx.30927.1.S1_at--1125--9271Chr11:6302673..6302697 (25 bp)
TCCGGTCCTCTATGATATCGACAAG
LOC_Os11g11360
OsAffx.30927.1.S1_at--739--1611Chr11:6302647..6302671 (25 bp)
AGCGGTACAACATTTTCTTCTATAG
LOC_Os11g11360
OsAffx.30927.1.S1_at--782--7131Chr11:6302591..6302615 (25 bp)
GTCATTGTGTTGCTGCTCCAAAGGA
LOC_Os11g11360
OsAffx.30927.1.S1_at--39--5571Chr11:6302542..6302566 (25 bp)
GAAAGGTTTTTTGGTCGATGCACAC
LOC_Os11g11360
OsAffx.30927.1.S1_at--224--6331Chr11:6302526..6302550 (25 bp)
GATGCACACGGTCATGCTGCTAGAC
LOC_Os11g11360
OsAffx.30927.1.S1_at--33--9111Chr11:6302500..6302524 (25 bp)
TGCTCGCTCTTATGGTAGCCTATGC
LOC_Os11g11360
OsAffx.30927.1.S1_at--1110--5371Chr11:6302445..6302469 (25 bp)
GAAGAATGTCTTCCTACTGCTCCTC
LOC_Os11g11360
OsAffx.30927.1.S1_at--123--2731Chr11:6302381..6302405 (25 bp)
AAGCAAATACAACCTTCACCACAAG
LOC_Os11g11360
Target Sequence 
AGTCCTCCTTAACAACGTTTGCGATGCAAAAAGACATGCTCAAGTACTTGATGCTGGTAGGGATATTAGCAGCAACCGCC
ACCTACCTGACGGGCCTGAAACCCCCTGGCGGCCTGTGGAAGGACAACGATGATGGACACTCCGCCGGCAATCCGGTCCT
CTATGATATCGACAAGAAGCGGTACAACATTTTCTTCTATAGCAACTCCACTTACTTCATGGCTTCCATCACCGTCATTG
TGTTGCTGCTCCAAAGGATGGTGTTGCCTGAGAGGAGCGGCGGAAAGGTTTTTTGGTCGATGCACACGGTCATGCTGCTA
GACATGCTCGCTCTTATGGTAGCCTATGCGGCAGGCAGCGTTCTGGACTGGGAGACGTCGAAGAATGTCTTCCTACTGCT
CCTCCCCGTACATATCTTTGTTGGGGGTTTGCTCTTCATATGCAAGCAAATACAACCTTCACCACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis