Browse Element(s) Details


Os.10134.1.S1_at

Description gb:AK060902.1
DB_XREF= gi:32970920
TID=Os.10134.1
CNT=93
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10134 (NCBI UniGene Cluster)
UG_TITLE=O.sativa SC34 mRNA for tumor suppressor
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D11, full insert sequence.
FL= gb:AK103710.1 gb:AK102971.1 gb:AK060902.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1139011/1160S ribosomal protein L10-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11350OsAffx.7076.1.S1_at11/1111+6292017..6296343expressed protein
LOC_Os11g11360OsAffx.30927.1.S1_at11/1111+6302316..6303143embryogenesis transmembrane protein, putative
LOC_Os11g11370Os.6226.1.S1_at11/1111+6303982..6306264expressed protein
LOC_Os11g11380OsAffx.19542.3.S1_x_at5/1111+6310590..6314320retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11390Os.10134.1.S1_at11/1111+6316734..631941460S ribosomal protein L10-1, putative, expressed
LOC_Os11g11390Os.11021.2.S1_x_at5/1111+6316734..631941460S ribosomal protein L10-1, putative, expressed
LOC_Os11g11400OsAffx.18798.1.S1_at11/1111+6327183..6327572hypothetical protein
LOC_Os11g11410Os.54127.1.S1_at11/1111+6331361..6337777AUX/IAA family protein, expressed
LOC_Os11g11420OsAffx.18799.1.S1_at10/1111+6343960..6345226IAA18, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10134.1.S1_at--745--8511Chr11:6318484..6318508 (25 bp)
TGGACATTGGTCAGGTTCTTCTTTC
LOC_Os11g11390
Os.10134.1.S1_at--135--10571Chr11:6318499..6318523 (25 bp)
TTCTTCTTTCTGTTCGTTGCAAGGA
LOC_Os11g11390
Os.10134.1.S1_at--80--9731Chr11:6318773..6319041 (25 bp)
TCAATGCTCAGCTGCTTGGTTCTCA
LOC_Os11g11390
Os.10134.1.S1_at--620--10851Chr11:6319032..6319056 (25 bp)
TTGGTTCTCATGGTCGTCTTGCGAA
LOC_Os11g11390
Os.10134.1.S1_at--1152--7131Chr11:6319047..6319071 (25 bp)
GTCTTGCGAAGCGTGCCCCTGGGAA
LOC_Os11g11390
Os.10134.1.S1_at--799--5291Chr11:6319069..6319093 (25 bp)
GAAGGCGTTTCTGGCTGAGACCATT
LOC_Os11g11390
Os.10134.1.S1_at--582--8891Chr11:6319084..6319108 (25 bp)
TGAGACCATTCAAGCTTCCGCCTAG
LOC_Os11g11390
Os.10134.1.S1_at--371--1291Chr11:6319107..6319131 (25 bp)
AGATGCCTCTTGCTGAATGGAACTT
LOC_Os11g11390
Os.10134.1.S1_at--163--3111Chr11:6319220..6319244 (25 bp)
AATAGTTCCTTCTGTAGGCCAGCTT
LOC_Os11g11390
Os.10134.1.S1_at--378--4031Chr11:6319298..6319322 (25 bp)
CGTTATCCCAAAGCTATATCTCAGT
LOC_Os11g11390
Os.10134.1.S1_at--548--4471Chr11:6319355..6319379 (25 bp)
GCCTGCGTCTTTACATCTCATAATG
LOC_Os11g11390
Target Sequence 
TGGACATTGGTCAGGTTCTTCTTTCTGTTCGTTGCAAGGAGAGCAATGCTAAACATGCTGAAGAGGCACTCCGCCGTGCC
AAGTTCAAGTTCCCTGGCCGGCAAAAGATCATCCACAGCAGGAAGTGGGGCTTCACCAAGTTCACCCGTGAGGAGTACGT
CAAGTTGAAGGCTGAGGGCAGAATTATGTCTGATGGTGTCAATGCTCAGCTGCTTGGTTCTCATGGTCGTCTTGCGAAGC
GTGCCCCTGGGAAGGCGTTTCTGGCTGAGACCATTCAAGCTTCCGCCTAGATGCCTCTTGCTGAATGGAACTTGAGAGAT
TTTGCTTTAGCTAGTCTAATTTTGCATGCTAGAACTCATGTTTTAAGAATTGGTTGTCTTCAGGATGATCTATTTTTCTG
TAATAGTTCCTTCTGTAGGCCAGCTTGATATGGAGGTTTTGCATATCATCAGTACCTTGTTTGAATTTTTGCTACATATC
GTTATCCCAAAGCTATATCTCAGTTGGATTGTGAAGCTTTATTAATTCATAAACTCGCCTGCGTCTTTACATCTCATAAT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis