Browse Element(s) Details


Os.6226.1.S1_at

Description gb:AK069168.1
DB_XREF= gi:32979192
TID=Os.6226.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023008P16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008P16, full insert sequence.
FL= gb:AK069168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1137011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11330Os.52702.1.S1_at11/1111+6281233..6283457expressed protein
LOC_Os11g11330Os.36607.2.S1_x_at1/1111+6281233..6283457expressed protein
LOC_Os11g11330OsAffx.27750.1.S1_x_at1/1111+6281233..6283457expressed protein
LOC_Os11g11340Os.7334.1.A1_at11/1111+6284373..6290628ATPase, AAA family protein, expressed
LOC_Os11g11340Os.56263.1.S1_at11/1111+6284373..6290628ATPase, AAA family protein, expressed
LOC_Os11g11350OsAffx.7076.1.S1_at11/1111+6292017..6296343expressed protein
LOC_Os11g11360OsAffx.30927.1.S1_at11/1111+6302316..6303143embryogenesis transmembrane protein, putative
LOC_Os11g11370Os.6226.1.S1_at11/1111+6303982..6306264expressed protein
LOC_Os11g11380OsAffx.19542.3.S1_x_at5/1111+6310590..6314320retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11390Os.10134.1.S1_at11/1111+6316734..631941460S ribosomal protein L10-1, putative, expressed
LOC_Os11g11390Os.11021.2.S1_x_at5/1111+6316734..631941460S ribosomal protein L10-1, putative, expressed
LOC_Os11g11400OsAffx.18798.1.S1_at11/1111+6327183..6327572hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6226.1.S1_at--271--7351Chr11:6305679..6305703 (25 bp)
GTGAAAACACTTCCTCTACGAATGA
LOC_Os11g11370
Os.6226.1.S1_at--562--1171Chr11:6305705..6305729 (25 bp)
AGTAATCCTTTCATTGCAGTATTGG
LOC_Os11g11370
Os.6226.1.S1_at--879--6431Chr11:6305968..6305992 (25 bp)
GATCATGGCTCGACGATCAGGTTGA
LOC_Os11g11370
Os.6226.1.S1_at--805--3471Chr11:6305985..6306009 (25 bp)
CAGGTTGAGCTGCACTACTTGTTGT
LOC_Os11g11370
Os.6226.1.S1_at--666--3731Chr11:6305999..6306023 (25 bp)
CTACTTGTTGTGTTGATGGCCTGCT
LOC_Os11g11370
Os.6226.1.S1_at--1005--871Chr11:6306014..6306038 (25 bp)
ATGGCCTGCTTATCGTATGAACTAT
LOC_Os11g11370
Os.6226.1.S1_at--865--8971Chr11:6306031..6306055 (25 bp)
TGAACTATCTGTCGTATGAGCTACT
LOC_Os11g11370
Os.6226.1.S1_at--806--5911Chr11:6306048..6306072 (25 bp)
GAGCTACTTGCTGTGTGAACTATTT
LOC_Os11g11370
Os.6226.1.S1_at--892--8971Chr11:6306095..6306119 (25 bp)
TGAACTCCTGTGATGCATGGACATA
LOC_Os11g11370
Os.6226.1.S1_at--646--3731Chr11:6306135..6306159 (25 bp)
CTAAGCCTGAGTGCAAATTTTCTAC
LOC_Os11g11370
Os.6226.1.S1_at--315--2432Chr11:6306189..6306213 (25 bp)
AAAACCTCTGTTGTTCAGTTGCAAG
LOC_Os11g11370
Target Sequence 
GTGAAAACACTTCCTCTACGAATGAAAGTAATCCTTTCATTGCAGTATTGGATAGTATGTGGTCTAAGAAGAGAGAGCTT
GATGCTATAAAGGAGGCCGGGAAAGNTGAGCGCCATGAAAAGTTATTGTCATTNCNAAAAGAGAGATTGGCACTAGAAAN
GACAGAAGTTAGAATACGAGAGGAATTTATTGGAATTCAAGAGAAACCAGCGGGATGAGAGAATTATGAACATGGACCTT
AGTGATATGACTGGGCAACTAAGAGAATACTACTTGAGGTTGCAGGGTGAGATCATGGCTCGACGATCAGGTTGAGCTGC
ACTACTTGTTGTGTTGATGGCCTGCTTATCGTATGAACTATCTGTCGTATGAGCTACTTGCTGTGTGAACTATTTGTTAT
ATGACCTATTTATTGCATGAACTCCTGTGATGCATGGACATATTTGTGATGTATGAACTAAGCCTGAGTGCAAATTTTCT
ACTTCTAACGCATGCTTTCTACCATTTTGGAAAAACCTCTGTTGTTCAGTTGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis