Browse Element(s) Details


OsAffx.7076.1.S1_at

Description tigr:9639.m01078
TID=OsAffx.7076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=137718 embryogenesis transmembrane protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1135011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11300NANA11+6265679..6269335retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11310NANA11+6270916..6271251hypothetical protein
LOC_Os11g11320Os.16593.1.S1_at11/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11320OsAffx.7533.1.S1_x_at1/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11320OsAffx.7533.1.S1_at1/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11330Os.52702.1.S1_at11/1111+6281233..6283457expressed protein
LOC_Os11g11330Os.36607.2.S1_x_at1/1111+6281233..6283457expressed protein
LOC_Os11g11330OsAffx.27750.1.S1_x_at1/1111+6281233..6283457expressed protein
LOC_Os11g11340Os.7334.1.A1_at11/1111+6284373..6290628ATPase, AAA family protein, expressed
LOC_Os11g11340Os.56263.1.S1_at11/1111+6284373..6290628ATPase, AAA family protein, expressed
LOC_Os11g11350OsAffx.7076.1.S1_at11/1111+6292017..6296343expressed protein
LOC_Os11g11360OsAffx.30927.1.S1_at11/1111+6302316..6303143embryogenesis transmembrane protein, putative
LOC_Os11g11370Os.6226.1.S1_at11/1111+6303982..6306264expressed protein
LOC_Os11g11380OsAffx.19542.3.S1_x_at5/1111+6310590..6314320retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11390Os.10134.1.S1_at11/1111+6316734..631941460S ribosomal protein L10-1, putative, expressed
LOC_Os11g11390Os.11021.2.S1_x_at5/1111+6316734..631941460S ribosomal protein L10-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7076.1.S1_at--561--9471Chr11:6292588..6292612 (25 bp)
TCTGTCTGGCAATCAACCATTTCAG
LOC_Os11g11350
OsAffx.7076.1.S1_at--677--5411Chr11:6292504..6292528 (25 bp)
GAACCAATGGGTTCTCCTCGCCAAA
LOC_Os11g11350
OsAffx.7076.1.S1_at--597--9251Chr11:6292490..6292514 (25 bp)
TCCTCGCCAAAGCTTTCGATGCAAG
LOC_Os11g11350
OsAffx.7076.1.S1_at--592--8571Chr11:6292438..6292462 (25 bp)
TGGTAGGGATACTAGCCGCGTCTAT
LOC_Os11g11350
OsAffx.7076.1.S1_at--186--4631Chr11:6292363..6292387 (25 bp)
GCGATGGACACTCTGCGGGCAATCC
LOC_Os11g11350
OsAffx.7076.1.S1_at--1124--9271Chr11:6292341..6292365 (25 bp)
TCCGGTCCTCTATGACATTAACATG
LOC_Os11g11350
OsAffx.7076.1.S1_at--429--4611Chr11:6292317..6292341 (25 bp)
GCGACGATACAATACTTTCTTCTAC
LOC_Os11g11350
OsAffx.7076.1.S1_at--1010--851Chr11:6292274..6292298 (25 bp)
ATGGCTTCTATCACTGTCATCGTGC
LOC_Os11g11350
OsAffx.7076.1.S1_at--868--5511Chr11:6292211..6292235 (25 bp)
GAAAAGGTCTTTTGGCCGATGCACA
LOC_Os11g11350
OsAffx.7076.1.S1_at--714--7131Chr11:6292184..6292208 (25 bp)
GTCATAGTGTTGGACATGCTTGCCC
LOC_Os11g11350
OsAffx.7076.1.S1_at--956--9931Chr11:6292148..6292172 (25 bp)
TACGCAGCAGGCAGCGTTCGGGATT
LOC_Os11g11350
Target Sequence 
TCTGTCTGGCAATCAACCATTTCAGAGAATTAAAGAAGAATACACAACAACAACAACAACAACAACCACCACCACCACCA
ACGGGAACCAATGGGTTCTCCTCGCCAAAGCTTTCGATGCAAGAAGAAGATGTGATCAAGTACCTGATGCTGGTAGGGAT
ACTAGCCGCGTCTATCACCTACCTGACAGGCCTAAAACCACCCGGCGGCCTATGGAGGGACGAAGGCGATGGACACTCTG
CGGGCAATCCGGTCCTCTATGACATTAACATGCGACGATACAATACTTTCTTCTACAGCAACTCCACTTCCTTCATGGCT
TCTATCACTGTCATCGTGCTGCTACTCCAAAGGATGTTGTCGCCCAAAACGGGTGGCGAAAAGGTCTTTTGGCCGATGCA
CACGGTCATAGTGTTGGACATGCTTGCCCTCCTGGTAGCCTACGCAGCAGGCAGCGTTCGGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis