Browse Element(s) Details


Os.16593.1.S1_at

Description gb:BI803439
DB_XREF= gi:16576143
DB_XREF=H110E04
CLONE=H110E04
TID=Os.16593.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.16593 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_174530.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1132011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11290OsAffx.10596.1.S1_x_at1/1111+6245642..6251771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11300NANA11+6265679..6269335retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11310NANA11+6270916..6271251hypothetical protein
LOC_Os11g11320Os.16593.1.S1_at11/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11320OsAffx.7533.1.S1_x_at1/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11320OsAffx.7533.1.S1_at1/1111+6275322..6277807retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g11330Os.52702.1.S1_at11/1111+6281233..6283457expressed protein
LOC_Os11g11330Os.36607.2.S1_x_at1/1111+6281233..6283457expressed protein
LOC_Os11g11330OsAffx.27750.1.S1_x_at1/1111+6281233..6283457expressed protein
LOC_Os11g11340Os.7334.1.A1_at11/1111+6284373..6290628ATPase, AAA family protein, expressed
LOC_Os11g11340Os.56263.1.S1_at11/1111+6284373..6290628ATPase, AAA family protein, expressed
LOC_Os11g11350OsAffx.7076.1.S1_at11/1111+6292017..6296343expressed protein
LOC_Os11g11360OsAffx.30927.1.S1_at11/1111+6302316..6303143embryogenesis transmembrane protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16593.1.S1_at--778--1871Chr11:6275452..6275476 (25 bp)
ACGAGGTGCTCGTCTTCTGTAGCTC
LOC_Os11g11320
Os.16593.1.S1_at--923--7311Chr11:6275447..6275471 (25 bp)
GTGCTCGTCTTCTGTAGCTCGCAGA
LOC_Os11g11320
Os.16593.1.S1_at--285--7151Chr11:6275441..6275465 (25 bp)
GTCTTCTGTAGCTCGCAGATCGCGA
LOC_Os11g11320
Os.16593.1.S1_at--540--9351Chr11:6275429..6275453 (25 bp)
TCGCAGATCGCGAGCCTGTACTGAT
LOC_Os11g11320
Os.16593.1.S1_at--58--1291Chr11:6275425..6275449 (25 bp)
AGATCGCGAGCCTGTACTGATCACC
LOC_Os11g11320
Os.16593.1.S1_at--368--4591Chr11:6275425..6275444 (20 bp)
GCGAGCCTGTACTGATCACCTTTTC
LOC_Os11g11320
Os.16593.1.S1_at--594--4471Chr11:6275415..6275440 (25 bp)
GCCTGTACTGATCACCTTTTCTCTA
LOC_Os11g11320
Os.16593.1.S1_at--44--1751Chr11:6275402..6275423 (22 bp)
ACCTTTTCTCTATAGTGGAGTAGCT
LOC_Os11g11320
Os.16593.1.S1_at--313--9551Chr11:6275394..6275418 (25 bp)
TCTATAGTGGAGTAGCTCAGAGCTA
LOC_Os11g11320
Os.16593.1.S1_at--352--6951Chr11:6275383..6275407 (25 bp)
GTAGCTCAGAGCTAGAGTAATTAGC
LOC_Os11g11320
Os.16593.1.S1_at--625--2032Chr06:9039943..9040234 (25 bp)
ACTAGCAATTAATTACTCCCTCTGT
NONE
Target Sequence 
ACGAGGTGCTCGTCTTCTGTAGCTCGCAGATCGCGAGCCTGTACTGATCACCTTTTCTCTATAGTGGAGTAGCTCAGAGC
TAGAGTAATTAGCTAACTAGCAATTAATTACTCCCTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis