Browse Element(s) Details


OsAffx.18799.1.S1_at

Description tigr:9639.m01086
TID=OsAffx.18799.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=auxin-induced protein IAA18 (imported) - Arabidopsis thaliana (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1143011/11expressed protein
LOC_Os11g1142010/11IAA18, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11400OsAffx.18798.1.S1_at11/1111+6327183..6327572hypothetical protein
LOC_Os11g11410Os.54127.1.S1_at11/1111+6331361..6337777AUX/IAA family protein, expressed
LOC_Os11g11420OsAffx.18799.1.S1_at10/1111+6343960..6345226IAA18, putative
LOC_Os11g11430OsAffx.18799.1.S1_at11/1111+6352091..6353868expressed protein
LOC_Os11g11430OsAffx.18799.1.S1_s_at11/1111+6352091..6353868expressed protein
LOC_Os11g11440OsAffx.18800.1.S1_s_at11/1111+6354529..6355370protein disulfide isomerase, putative
LOC_Os11g11450OsAffx.7078.1.S1_at11/1111+6357337..6358020hypothetical protein
LOC_Os11g11460OsAffx.18801.1.S1_at11/1111+6367344..6367937hypothetical protein
LOC_Os11g11480OsAffx.7079.1.S1_at11/1111+6372615..6373329hypothetical protein
LOC_Os11g11490NANA11+6377720..6380809Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0010102biological_processlateral root morphogenesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005837cellular_component26S proteasome
GO:0008180cellular_componentsignalosome complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18799.1.S1_at--1040--2192Chr11:6352427..6352451 (25 bp)
ACAACTATGACTCTTTGTCCTTCAC
LOC_Os11g11430
OsAffx.18799.1.S1_at--665--2532Chr11:6352429..6352453 (25 bp)
AACTATGACTCTTTGTCCTTCACTT
LOC_Os11g11430
OsAffx.18799.1.S1_at--318--10112Chr11:6352432..6352456 (25 bp)
TATGACTCTTTGTCCTTCACTTTAA
LOC_Os11g11430
OsAffx.18799.1.S1_at--232--8952Chr11:6352434..6352458 (25 bp)
TGACTCTTTGTCCTTCACTTTAAAA
LOC_Os11g11430
OsAffx.18799.1.S1_at--807--32Chr11:6352461..6352962 (25 bp)
ATTGGGCAACAACTATTCCATGTCA
LOC_Os11g11430
OsAffx.18799.1.S1_at--85--7612Chr11:6352464..6352965 (25 bp)
GGGCAACAACTATTCCATGTCACCA
LOC_Os11g11430
OsAffx.18799.1.S1_at--413--5152Chr11:6352466..6352967 (25 bp)
GCAACAACTATTCCATGTCACCATT
LOC_Os11g11430
OsAffx.18799.1.S1_at--695--2512Chr11:6352471..6352972 (25 bp)
AACTATTCCATGTCACCATTTGAAC
LOC_Os11g11430
OsAffx.18799.1.S1_at--177--92Chr11:6352475..6352976 (25 bp)
ATTCCATGTCACCATTTGAACTTGA
LOC_Os11g11430
OsAffx.18799.1.S1_at--843--8732Chr11:6352958..6352982 (25 bp)
TGTCACCATTTGAACTTGAAGGCTT
LOC_Os11g11430
OsAffx.18799.1.S1_at--755--4711Chr11:6353631..6353655 (25 bp)
GCTGGATACACGAGCAACGATGACC
LOC_Os11g11430
Target Sequence 
ACAACTATGACTCTTTGTCCTTCACTTTAAAAANATTGGGCAACAACTATTCCATGTCACCATTTGAACTTGAAGGCTTN
GTGAACAANGAAGAAGATGGTGCNATAGANANNGACTTTGANCTCNTGTANGATGANATGNATGGTGTTCGTTACTTNCT
TGGTGANGTCCCATGGGAGGTTTTCACCANTACAGTNAAAANGATCTACATTGTNCCTGCAGAACAACAGAATGAAANTG
ANTATCAGGAGGAGGAAGAGGACAACGCGGCTGCTGCTGCTACTGCTGACGAAGATGNAGATGGANNTNNNNNNNNNNNN
NNCNNTNNTNNNNCNGNNGNCNNNNTTNNNNANNNNGCTGGATACACGAGCAACGATGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis