Browse Element(s) Details


OsAffx.9036.1.S1_at

Description gb:NM_193259.1
DB_XREF= gi:34913601
GEN=P0014E04.23
TID=OsAffx.9036.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0014E04.23 (P0014E04.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g335492/11Protein phosphatase 2C containing protein, expressed
LOC_Os06g257901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g388001/11hypothetical protein
LOC_Os09g091701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33490OsAffx.4991.1.S1_at11/116+19507721..19510237CAPIP1, putative
LOC_Os06g33499NANA6+19511072..19511723NA
LOC_Os06g33510OsAffx.4992.1.S1_at11/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33510Os.54774.1.S1_x_at2/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33510Os.54774.1.S1_at2/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33520OsAffx.27916.1.S1_at11/116+19515633..19523705DEAD box RNA helicase, putative, expressed
LOC_Os06g33530OsAffx.4993.1.S1_at11/116+19525784..19528695Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549OsAffx.15713.1.S1_s_at11/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549Os.46761.1.S1_at11/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549Os.52702.1.S1_at9/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549OsAffx.1436.1.S1_x_at2/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549Os.51348.1.S1_x_at2/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549OsAffx.9036.1.S1_at2/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33570Os.20835.1.S1_at11/116+19543603..19552017Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33570Os.50135.1.S1_at4/116+19543603..19552017Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33580NANA6+19553852..19554763retrotransposon protein, putative, unclassified
LOC_Os06g33590NANA6+19556624..19556833hypothetical protein
LOC_Os06g33600Os.50135.1.S1_at11/116+19559075..19561849Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33610Os.17491.1.S1_at1/116+19563325..19568252Cyclic nucleotide-gated ion channel 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9036.1.S1_at--821--1831Chr01:19965406..19965430 (25 bp)
ACGCGTGGCTAAAAGACGGCTCGAC
NONE
OsAffx.9036.1.S1_at--1117--1931Chr01:19965391..19965415 (25 bp)
ACGGCTCGACGGGTAACCAGAATGC
NONE
OsAffx.9036.1.S1_at--629--1711Chr01:19965376..19965400 (25 bp)
ACCAGAATGCAATCAGCCGAGAGCT
NONE
OsAffx.9036.1.S1_at--654--4511Chr01:19965361..19965385 (25 bp)
GCCGAGAGCTTCAGAAATGCTTTAA
NONE
OsAffx.9036.1.S1_at--1114--2291Chr01:19965336..19965360 (25 bp)
AAAGGCTCGTGCATATGCATTGGAA
NONE
OsAffx.9036.1.S1_at--175--23362Chr12:22233566..22233590 (25 bp)
AAAGTGATGAAGTTGCACAGCCGTG
NONE
OsAffx.9036.1.S1_at--931--5511Chr01:19962867..19962891 (25 bp)
GAAAAAACCAGTCGGCAGTAGTCAG
NONE
OsAffx.9036.1.S1_at--545--34514Chr12:18761261..18761363 (25 bp)
CAGTAGTCAGACGAGGCAAATCAAA
NONE
OsAffx.9036.1.S1_at--1152--22970Chr12:18761361..18761385 (25 bp)
AAAGGCGATGACGAAATCCACCAAT
NONE
OsAffx.9036.1.S1_at--854--10434Chr07:17106906..17106930 (25 bp)
TTATGGGTACAATCCACCAATCATG
NONE
OsAffx.9036.1.S1_at--535--23747Chr12:25826468..25826803 (25 bp)
AAACGCAACTGTTGTCCAACTCGTC
NONE
Target Sequence 
ACGCGTGGCTAAAAGACGGCTCGACGGGTAACCAGAATGCAATCAGCCGAGAGCTTCAGAAATGCTTTAAAAAGGCTCGT
GCATATGCATTGGAACCAAAAGAGGTGGCAAAAATATTGGTGGTAGTGAAGATAATGATACCAATCAAAAGTGATGAAGT
TGCACAGCCGTGGAAGCGAAAAAACCAGTCGGCAGTAGTCAGACGAGGCAAATCAAAGGCGATGACGAAATCCACCAATC
ATGAAGATGAAGAAACATTATGGGTACAATCCACCAATCATGAAGATGAAGAAAATAGTCGGCGACGACAAACGCAACTG
TTGTCCAACTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis