Browse Element(s) Details

OsAffx.15713.1.S1_s_at

Description

tigr:9634.m03148
TID=OsAffx.15713.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g33549	11/11	Protein phosphatase 2C containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g33490	OsAffx.4991.1.S1_at	11/11	6	+	19507721..19510237	CAPIP1, putative
LOC_Os06g33499	NA	NA	6	+	19511072..19511723	NA
LOC_Os06g33510	OsAffx.4992.1.S1_at	11/11	6	+	19512647..19514137	retrotransposon, putative, centromere-specific
LOC_Os06g33510	Os.54774.1.S1_x_at	2/11	6	+	19512647..19514137	retrotransposon, putative, centromere-specific
LOC_Os06g33510	Os.54774.1.S1_at	2/11	6	+	19512647..19514137	retrotransposon, putative, centromere-specific
LOC_Os06g33520	OsAffx.27916.1.S1_at	11/11	6	+	19515633..19523705	DEAD box RNA helicase, putative, expressed
LOC_Os06g33530	OsAffx.4993.1.S1_at	11/11	6	+	19525784..19528695	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	OsAffx.15713.1.S1_s_at	11/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	Os.46761.1.S1_at	11/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	Os.52702.1.S1_at	9/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	OsAffx.1436.1.S1_x_at	2/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	Os.51348.1.S1_x_at	2/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	OsAffx.9036.1.S1_at	2/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33570	Os.20835.1.S1_at	11/11	6	+	19543603..19552017	Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33570	Os.50135.1.S1_at	4/11	6	+	19543603..19552017	Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33580	NA	NA	6	+	19553852..19554763	retrotransposon protein, putative, unclassified
LOC_Os06g33590	NA	NA	6	+	19556624..19556833	hypothetical protein
LOC_Os06g33600	Os.50135.1.S1_at	11/11	6	+	19559075..19561849	Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33610	Os.17491.1.S1_at	1/11	6	+	19563325..19568252	Cyclic nucleotide-gated ion channel 1, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0015071	molecular_function	protein phosphatase type 2C activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15713.1.S1_s_at--934--913	1	Chr06:19540757..19540781 (25 bp)	TGCGGGGTGGGCTGCGGCTCCTCGT	LOC_Os06g33549
OsAffx.15713.1.S1_s_at--717--941	1	Chr06:19540727..19540751 (25 bp)	TCGTCGTTTGCTCCGCCGCGGATGC	LOC_Os06g33549
OsAffx.15713.1.S1_s_at--449--933	1	Chr06:19540664..19540688 (25 bp)	TCGCCGTCGCAGTCCAACGGCTGGA	LOC_Os06g33549
OsAffx.15713.1.S1_s_at--404--425	1	Chr06:19540661..19540685 (25 bp)	CCGTCGCAGTCCAACGGCTGGATTA	LOC_Os06g33549
OsAffx.15713.1.S1_s_at--711--397	1	Chr06:19540660..19540684 (25 bp)	CGTCGCAGTCCAACGGCTGGATTAC	LOC_Os06g33549
OsAffx.15713.1.S1_s_at--355--723	1	Chr06:19540659..19540683 (25 bp)	GTCGCAGTCCAACGGCTGGATTACC	LOC_Os06g33549
OsAffx.15713.1.S1_s_at--691--501	1	Chr06:19540656..19540680 (25 bp)	GCAGTCCAACGGCTGGATTACCGGC	LOC_Os06g33549
OsAffx.15713.1.S1_s_at--733--111	1	Chr06:19540654..19540678 (25 bp)	AGTCCAACGGCTGGATTACCGGCGG	LOC_Os06g33549
OsAffx.15713.1.S1_s_at--1154--723	1	Chr06:19540653..19540677 (25 bp)	GTCCAACGGCTGGATTACCGGCGGC	LOC_Os06g33549
OsAffx.15713.1.S1_s_at--658--921	1	Chr06:19540652..19540676 (25 bp)	TCCAACGGCTGGATTACCGGCGGCT	LOC_Os06g33549
OsAffx.15713.1.S1_s_at--438--257	1	Chr06:19540649..19540673 (25 bp)	AACGGCTGGATTACCGGCGGCTCCG	LOC_Os06g33549

Target Sequence

TGCGGGGTGGGCTGCGGCTCCTCGTCGTCGTCGTCGTTTGCTCCGCCGCGGATGCAGGCCCGGCGGGCCGCGGGGTCGGC
TGCGCGCACGCGGTCGCCGTCGCAGTCCAACGGCTGGATTACCGGCGGCTCCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis