Browse Element(s) Details


Os.20835.1.S1_at

Description gb:AK099993.1
DB_XREF= gi:32985202
TID=Os.20835.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.20835 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132D09, full insert sequence.
FL= gb:AK099993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3357011/11Cyclic nucleotide-gated ion channel 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33520OsAffx.27916.1.S1_at11/116+19515633..19523705DEAD box RNA helicase, putative, expressed
LOC_Os06g33530OsAffx.4993.1.S1_at11/116+19525784..19528695Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549OsAffx.15713.1.S1_s_at11/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549Os.46761.1.S1_at11/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549Os.52702.1.S1_at9/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549OsAffx.1436.1.S1_x_at2/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549Os.51348.1.S1_x_at2/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549OsAffx.9036.1.S1_at2/116+19530565..19541007Protein phosphatase 2C containing protein, expressed
LOC_Os06g33570Os.20835.1.S1_at11/116+19543603..19552017Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33570Os.50135.1.S1_at4/116+19543603..19552017Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33580NANA6+19553852..19554763retrotransposon protein, putative, unclassified
LOC_Os06g33590NANA6+19556624..19556833hypothetical protein
LOC_Os06g33600Os.50135.1.S1_at11/116+19559075..19561849Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33610Os.17491.1.S1_at1/116+19563325..19568252Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33620OsAffx.15715.1.S1_x_at11/116+19575635..19576369hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005216molecular_functionion channel activity
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0005261molecular_functioncation channel activity
GO:0005267molecular_functionpotassium channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20835.1.S1_at--238--2812Chr06:19568843..19568867 (25 bp)
AAGATCGAAGACTCTCTACGCGAGA
NONE
Os.20835.1.S1_at--30--6172Chr06:19568875..19568899 (25 bp)
GAGGTTGCAGTTCGCAATCGTTAAT
NONE
Os.20835.1.S1_at--367--3012Chr06:19568897..19568921 (25 bp)
AATGACGGTGCTACAACTCTCAGCT
NONE
Os.20835.1.S1_at--621--10191Chr06:19551509..19551533 (25 bp)
TATATGCTTCGCGTTTCGCTGGCAA
LOC_Os06g33570
Os.20835.1.S1_at--627--4712Chr06:19551526..19551550 (25 bp)
GCTGGCAACATGATGCGGATCTTGA
LOC_Os06g33570
Os.20835.1.S1_at--1048--9572Chr06:19568970..19568994 (25 bp)
TCTTGAGGAGAAATGCCACCCGCAA
NONE
Os.20835.1.S1_at--1010--5911Chr06:19551640..19551664 (25 bp)
GAGCAGTAGTTCTGTTTACCACGAA
LOC_Os06g33570
Os.20835.1.S1_at--813--10271Chr06:19551717..19551741 (25 bp)
TTTGCTTTCAGTTGACACTAGACCT
LOC_Os06g33570
Os.20835.1.S1_at--418--3051Chr06:19551762..19551786 (25 bp)
AATCGCAATAGGTGTCTGTATCTTT
LOC_Os06g33570
Os.20835.1.S1_at--313--10071Chr06:19551878..19551902 (25 bp)
TAGTGTAGTGAGCATTCCATCCCGT
LOC_Os06g33570
Os.20835.1.S1_at--1022--4231Chr06:19551899..19551923 (25 bp)
CCGTGTTCCCATCAGGCTCTTGAAG
LOC_Os06g33570
Target Sequence 
AAGATCGAAGACTCTCTACGCGAGAAGGAGAAGAGGTTGCAGTTCGCAATCGTTAATGACGGTGCTACAACTCTCAGCTT
CAGGGCAGCGATATATGCTTCGCGTTTCGCTGGCAACATGATGCGGATCTTGAGGAGAAATGCCACCCGCAAGGCTCGGT
TGAAGGAAAGTGTGCCTGCAAGGTTGTTACAAAAACCAGCAGAACCCAACTTTGCTGCAGAAGAGCAGTAGTTCTGTTTA
CCACGAATGCGTAAGGAATTTTTTGTGCATGGCTTGTGCATTTTTTACTTGCTGATGTTTTTGCTTTCAGTTGACACTAG
ACCTACAAATTAAGGAGAGGAAAAAATCGCAATAGGTGTCTGTATCTTTCTGTAAGATCTGTATATGTGTTCGTGTATGA
TAATAGGTGATACGTGTAATTATTATTCATCAGGTGTTTATATACAAATTGTGTTTATAGTAGTGTAGTGAGCATTCCAT
CCCGTGTTCCCATCAGGCTCTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis