Browse Element(s) Details

Os.50135.1.S1_at

Description

gb:AK119931.1
DB_XREF= gi:37989554
TID=Os.50135.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A07, full insert sequence.
FL= gb:AK119931.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g33600	11/11	Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33570	4/11	Cyclic nucleotide-gated ion channel 1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g33549	OsAffx.15713.1.S1_s_at	11/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	Os.46761.1.S1_at	11/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	Os.52702.1.S1_at	9/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	OsAffx.1436.1.S1_x_at	2/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	Os.51348.1.S1_x_at	2/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33549	OsAffx.9036.1.S1_at	2/11	6	+	19530565..19541007	Protein phosphatase 2C containing protein, expressed
LOC_Os06g33570	Os.20835.1.S1_at	11/11	6	+	19543603..19552017	Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33570	Os.50135.1.S1_at	4/11	6	+	19543603..19552017	Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33580	NA	NA	6	+	19553852..19554763	retrotransposon protein, putative, unclassified
LOC_Os06g33590	NA	NA	6	+	19556624..19556833	hypothetical protein
LOC_Os06g33600	Os.50135.1.S1_at	11/11	6	+	19559075..19561849	Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33610	Os.17491.1.S1_at	1/11	6	+	19563325..19568252	Cyclic nucleotide-gated ion channel 1, putative, expressed
LOC_Os06g33620	OsAffx.15715.1.S1_x_at	11/11	6	+	19575635..19576369	hypothetical protein
LOC_Os06g33630	Os.45974.1.A1_at	1/11	6	+	19577862..19578161	hypothetical protein
LOC_Os06g33640	Os.55529.1.S1_at	11/11	6	+	19582326..19584411	CAPIP1, putative, expressed
LOC_Os06g33650	OsAffx.27917.1.S1_at	10/11	6	+	19585428..19588626	hypothetical protein
LOC_Os06g33650	OsAffx.1755.1.S1_x_at	2/11	6	+	19585428..19588626	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0005216	molecular_function	ion channel activity
GO:0005242	molecular_function	inward rectifier potassium channel activity
GO:0005261	molecular_function	cation channel activity
GO:0005267	molecular_function	potassium channel activity
GO:0005516	molecular_function	calmodulin binding
GO:0030551	molecular_function	cyclic nucleotide binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50135.1.S1_at--867--813	1	Chr06:19560925..19560949 (25 bp)	GGACAGGCTATATCGCGTCTTCTCC	LOC_Os06g33600
Os.50135.1.S1_at--1022--413	1	Chr06:19560938..19560962 (25 bp)	CGCGTCTTCTCCTACAACTTTTGAT	LOC_Os06g33600
Os.50135.1.S1_at--822--429	1	Chr06:19561502..19561526 (25 bp)	CCTAATCTTCGAAGCTCAGAGGTTG	LOC_Os06g33600
Os.50135.1.S1_at--1010--409	1	Chr06:19561511..19561535 (25 bp)	CGAAGCTCAGAGGTTGCAAAAGCCA	LOC_Os06g33600
Os.50135.1.S1_at--577--869	1	Chr06:19561570..19561594 (25 bp)	TGTGCCTCGACTGATCAGAATAAGA	LOC_Os06g33600
Os.50135.1.S1_at--929--479	2	Chr06:19561681..19561705 (25 bp)	GCTCGCCAGTCATGTAAGTATTCTA	LOC_Os06g33600
Os.50135.1.S1_at--243--281	2	Chr06:19561696..19561720 (25 bp)	AAGTATTCTATTCAATAACTCTGGA	LOC_Os06g33600
Os.50135.1.S1_at--919--33	2	Chr06:19561710..19561734 (25 bp)	ATAACTCTGGATAGTCAACAATGCC	LOC_Os06g33600
Os.50135.1.S1_at--163--227	1	Chr06:19561735..19561759 (25 bp)	AAATAAATTGTCCTTTGCCAGAGCA	LOC_Os06g33600
Os.50135.1.S1_at--531--441	1	Chr06:19561751..19561775 (25 bp)	GCCAGAGCAATATTTAACTGCAATA	LOC_Os06g33600
Os.50135.1.S1_at--1078--239	2	Chr06:19561788..19561812 (25 bp)	AAACATGATCAATTTCCTGTAAAGA	LOC_Os06g33600

Target Sequence

GGACAGGCTATATCGCGTCTTCTCCTACAACTTTTGATCGGGGTGTCTTGGTTGAGGATAGATATGCAATAGCAAAGCGA
TACTTGTCAACATATTTTCTGATTGATGTCTTTGCTGTTCTACCCCTCCCTCAGGTGGTTATTTTGGTTGTGCTACCTAA
TCTTCGAAGCTCAGAGGTTGCAAAAGCCAAAAATATCTTGATGTTTATAGTTCTATGCCAATATGTGCCTCGACTGATCA
GAATAAGACCACTGTATCTCCAAATCACAAGGTCTGCTGGGGTAATTACAGAGACACCATGGCCTGGTGCTGTTTTGATC
CTTTTAATTTACTTGCTCGCCAGTCATGTAAGTATTCTATTCAATAACTCTGGATAGTCAACAATGCCAAATAAATTGTC
CTTTGCCAGAGCAATATTTAACTGCAATAGTGAAAAGCTGAAAACATGATCAATTTCCTGTAAAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis