Browse Element(s) Details


Os.45974.1.A1_at

Description gb:CB636434
DB_XREF= gi:29631425
DB_XREF=OSJNEa01P01.r
CLONE=OSJNEa01P01
TID=Os.45974.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.45974 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g236542/11retrotransposon protein, putative, unclassified
LOC_Os01g258391/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g198101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g336301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23600OsAffx.29319.1.S1_at10/118+14155196..14156372hypothetical protein
LOC_Os08g23610OsAffx.24330.2.S1_at1/118+14157942..14160773retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620OsAffx.30891.1.S1_x_at2/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620Os.47004.1.S1_at2/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620Os.45173.1.S1_x_at1/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620Os.47999.2.A1_x_at1/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23630NANA8+14168200..14173377retrotransposon protein, putative, unclassified
LOC_Os08g23640OsAffx.5904.1.S1_at3/118+14173997..14175854retrotransposon protein, putative, unclassified
LOC_Os08g23640Os.28943.1.S1_x_at2/118+14173997..14175854retrotransposon protein, putative, unclassified
LOC_Os08g23654Os.45161.1.A1_x_at3/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654Os.45974.1.A1_at2/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.13882.2.S1_at2/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.22699.1.S1_x_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.30486.1.S1_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.593.1.S1_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23670NANA8+14186856..14187658hypothetical protein
LOC_Os08g23680Os.14860.1.S1_at11/118+14188455..14195291FHA domain containing protein, expressed
LOC_Os08g23690OsAffx.17116.1.S1_at11/118+14195712..14196149hypothetical protein
LOC_Os08g23700Os.53734.1.S1_at10/118+14198165..14205514transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g23710Os.4696.1.S1_at11/118+14207673..1421009760S ribosomal protein L7a, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45974.1.A1_at--717--8731NONE
TGTCATCGGCATGGAGCCGATCGGC
NONE
Os.45974.1.A1_at--843--10031NONE
TAGATTTAACTAGGGTTTCTTTGCT
NONE
Os.45974.1.A1_at--709--78769Chr12:21164508..21164532 (25 bp)
GGTTTCTTTGCTTCTATTTCTTGTT
NONE
Os.45974.1.A1_at--705--95579Chr12:7562840..7562864 (25 bp)
TCTTTGCTTCTATTTCTTGTTGATT
NONE
Os.45974.1.A1_at--929--371NONE
ATCAACTGGCATGGTAATATATCCG
NONE
Os.45974.1.A1_at--519--811NONE
ATGGTAATATATCCGAAGGCGAGCT
NONE
Os.45974.1.A1_at--15--8451NONE
GGCCACGTGTTATTCTGTCAACAAT
NONE
Os.45974.1.A1_at--162--6471Chr01:21189243..21189267 (25 bp)
GATACATTTTGAAGTTTAACCCTCT
NONE
Os.45974.1.A1_at--812--53311Chr11:17844578..17844602 (25 bp)
GAAGTTTAACCCTCTACATGCAGTA
NONE
Os.45974.1.A1_at--1128--2594Chr11:17844585..17844609 (25 bp)
AACCCTCTACATGCAGTAACACTAT
NONE
Os.45974.1.A1_at--804--24712Chr11:17844602..17844626 (25 bp)
AACACTATAGCATCATGGTGGGAAC
NONE
Target Sequence 
TGTCATCGGCATGGAGCCGATCGGCTATCATTTATAGATTTAACTAGGGTTTCTTTGCTTCTATTTCTTGTTGATTACAG
GATCAAATCAACTGGCATGGTAATATATCCGAAGGCGAGCTTTGGACCTGCACTGGAGTTAAGCAGATCTCCCAGGCCAC
GTGTTATTCTGTCAACAATGTAGAAACAAAAAATTGGTGGGAGGAGACCGGTTTTTTTGAGAAGAGGGAGGAAGAACGGT
TTTTTGAAGAGGGGAGTACGTAGATACATTTTGAAGTTTAACCCTCTACATGCAGTAACACTATAGCATCATGGTGGGAA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45974.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis