Browse Element(s) Details


Os.53734.1.S1_at

Description gb:AK099609.1
DB_XREF= gi:32984818
TID=Os.53734.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53734 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049F07, full insert sequence.
FL= gb:AK099609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2370010/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23630NANA8+14168200..14173377retrotransposon protein, putative, unclassified
LOC_Os08g23640OsAffx.5904.1.S1_at3/118+14173997..14175854retrotransposon protein, putative, unclassified
LOC_Os08g23640Os.28943.1.S1_x_at2/118+14173997..14175854retrotransposon protein, putative, unclassified
LOC_Os08g23654Os.45161.1.A1_x_at3/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654Os.45974.1.A1_at2/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.13882.2.S1_at2/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.22699.1.S1_x_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.30486.1.S1_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.593.1.S1_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23670NANA8+14186856..14187658hypothetical protein
LOC_Os08g23680Os.14860.1.S1_at11/118+14188455..14195291FHA domain containing protein, expressed
LOC_Os08g23690OsAffx.17116.1.S1_at11/118+14195712..14196149hypothetical protein
LOC_Os08g23700Os.53734.1.S1_at10/118+14198165..14205514transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g23710Os.4696.1.S1_at11/118+14207673..1421009760S ribosomal protein L7a, putative, expressed
LOC_Os08g23720Os.30016.1.S1_at11/118+14216532..14221737Glycosyl hydrolases family 17 protein, expressed
LOC_Os08g23730Os.15669.1.S1_at11/118+14224138..14227984GMP synthase, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_x_at11/118+14229835..14233602subtilisin-like protease, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53734.1.S1_at--1003--7051Chr08:14202204..14202228 (25 bp)
GTAAGCTCCAAGTCCTTGATCAATC
LOC_Os08g23700
Os.53734.1.S1_at--68--10791NONE
TTGATCAATCCTGCACAGCTCGTAG
NONE
Os.53734.1.S1_at--377--3391Chr08:14204991..14205014 (24 bp)
CAGCTCGTAGTTTGGTGGTGCAGCA
LOC_Os08g23700
Os.53734.1.S1_at--1124--7651Chr08:14205019..14205043 (25 bp)
GGGATAATGCGGATCCTGCTGTAAA
LOC_Os08g23700
Os.53734.1.S1_at--769--3831Chr08:14205034..14205058 (25 bp)
CTGCTGTAAAATGCCTTCTGCGGAT
LOC_Os08g23700
Os.53734.1.S1_at--1157--1711Chr08:14205062..14205086 (25 bp)
ACCATCTTAAGAGTGCGTGTCAGTT
LOC_Os08g23700
Os.53734.1.S1_at--743--6131Chr08:14205096..14205120 (25 bp)
GAGGGCACAGCAGGCCCGCTTGAAT
LOC_Os08g23700
Os.53734.1.S1_at--216--4231Chr08:14205111..14205135 (25 bp)
CCGCTTGAATTCCTTCTCCATGTGG
LOC_Os08g23700
Os.53734.1.S1_at--770--10031Chr08:14205169..14205193 (25 bp)
TAGATGCAGCCTGTGCCTGATAAAA
LOC_Os08g23700
Os.53734.1.S1_at--153--5471Chr08:14205197..14205221 (25 bp)
GAACTTTTTAATGCTTTTTGTCAGG
LOC_Os08g23700
Os.53734.1.S1_at--792--9151Chr08:14205249..14205273 (25 bp)
TGCCGCCTAGCAAAGTTGGTCCTGC
LOC_Os08g23700
Target Sequence 
GTAAGCTCCAAGTCCTTGATCAATCCTGCACAGCTCGTAGTTTGGTGGTGCAGCATTTGGGGATAATGCGGATCCTGCTG
TAAAATGCCTTCTGCGGATNCANACCATCTTAAGAGTGCGTGTCAGTTACAGGATANGAGGGCACAGCAGGCCCGCTTGA
ATTCCTTCTCCATGTGGTGGAAAATGCACCTGCACTGGAGATTTTAACAGTAGATGCAGCCTGTGCCTGATAAAAGGGGA
ACTTTTTAATGCTTTTTGTCAGGCTTCTNGACATCACCTCGTTCGGAGGNTGCCGCCTAGCAAAGTTGGTCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis