Browse Element(s) Details


Os.4696.1.S1_at

Description gb:D12631.1
DB_XREF= gi:303854
TID=Os.4696.1
CNT=42
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.4696 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for ribosomal protein L7A, complete cds.
PROD=ribosomal protein L7A
FL= gb:D12631.1 gb:AK121204.1 gb:AK062210.1 gb:AK098843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2371011/1160S ribosomal protein L7a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23654Os.45161.1.A1_x_at3/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654Os.45974.1.A1_at2/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.13882.2.S1_at2/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.22699.1.S1_x_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.30486.1.S1_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.593.1.S1_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23670NANA8+14186856..14187658hypothetical protein
LOC_Os08g23680Os.14860.1.S1_at11/118+14188455..14195291FHA domain containing protein, expressed
LOC_Os08g23690OsAffx.17116.1.S1_at11/118+14195712..14196149hypothetical protein
LOC_Os08g23700Os.53734.1.S1_at10/118+14198165..14205514transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g23710Os.4696.1.S1_at11/118+14207673..1421009760S ribosomal protein L7a, putative, expressed
LOC_Os08g23720Os.30016.1.S1_at11/118+14216532..14221737Glycosyl hydrolases family 17 protein, expressed
LOC_Os08g23730Os.15669.1.S1_at11/118+14224138..14227984GMP synthase, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_x_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23750OsAffx.29320.1.S1_at11/118+14234271..14234814hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4696.1.S1_at--131--2651Chr08:14208621..14208645 (25 bp)
AACCATGTCACATACCTCATTGAGC
LOC_Os08g23710
Os.4696.1.S1_at--558--5951Chr08:14208481..14208505 (25 bp)
GAGCAAGGCCCAACTGGTCGTCATT
LOC_Os08g23710
Os.4696.1.S1_at--800--4371Chr08:14208472..14208496 (25 bp)
CCAACTGGTCGTCATTGCTCATGAT
LOC_Os08g23710
Os.4696.1.S1_at--396--7231Chr08:14208393..14208417 (25 bp)
GTCCCTTACTGCATTGTGAAAGGAA
LOC_Os08g23710
Os.4696.1.S1_at--497--1671Chr08:14208278..14208391 (25 bp)
AGCCCGTCTTGGATCAATTGTTCAC
LOC_Os08g23710
Os.4696.1.S1_at--231--1431Chr08:14208252..14208276 (25 bp)
AGAAAACTGCATCTGTCCTCTGCTT
LOC_Os08g23710
Os.4696.1.S1_at--298--2251Chr08:14207929..14207953 (25 bp)
AAATTATAGCTCCTGTAGTTTCATT
LOC_Os08g23710
Os.4696.1.S1_at--738--6191Chr08:14207886..14207910 (25 bp)
GAGGAACTCGAATTAGCACTGTACA
LOC_Os08g23710
Os.4696.1.S1_at--813--3331Chr08:14207870..14207894 (25 bp)
CACTGTACAACCGTGCTGTGGTTTT
LOC_Os08g23710
Os.4696.1.S1_at--908--3871Chr08:14207855..14207879 (25 bp)
CTGTGGTTTTCTGAGTCTTGGTTTC
LOC_Os08g23710
Os.4696.1.S1_at--265--10851Chr08:14207838..14207862 (25 bp)
TTGGTTTCATATCTTCTCTGTTCAC
LOC_Os08g23710
Target Sequence 
AACCATGTCACATACCTCATTGAGCAGAGCAAGGCCCAACTGGTCGTCATTGCTCATGATGTCGATCCGATTGAGCTGGT
TGTGTGGCTTCCAGCCCTGTGCAGGAAGATGGAGGTCCCTTACTGCATTGTGAAAGGAAAAGCCCGTCTTGGATCAATTG
TTCACAAGAAAACTGCATCTGTCCTCTGCTTGACCACTGTCAAGAACGAGGACAAGCTTGAGTTCAGCAAGATCCTGGAG
GCTATCAAGGCGAACTTCAACGACAAATTCGATGAGGTTAGGAAGAAGTGGGGAGGCGGCGTCATGGGATCCAAGTCGCA
GGCGAAGACCAAGGCCAGGGAAAAGCTGCTCGCCAAGGAGGCTGCCCAGCGGATGACCTAAATTATAGCTCCTGTAGTTT
CATTTTTCAGTCAGATTTTGACGAGGAACTCGAATTAGCACTGTACAACCGTGCTGTGGTTTTCTGAGTCTTGGTTTCAT
ATCTTCTCTGTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis