Browse Element(s) Details


Os.14860.1.S1_at

Description gb:AK120478.1
DB_XREF= gi:37990101
TID=Os.14860.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111L14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111L14, full insert sequence.
FL= gb:AK120478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2368011/11FHA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23620OsAffx.30891.1.S1_x_at2/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620Os.47004.1.S1_at2/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620Os.45173.1.S1_x_at1/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23620Os.47999.2.A1_x_at1/118+14161120..14167104retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23630NANA8+14168200..14173377retrotransposon protein, putative, unclassified
LOC_Os08g23640OsAffx.5904.1.S1_at3/118+14173997..14175854retrotransposon protein, putative, unclassified
LOC_Os08g23640Os.28943.1.S1_x_at2/118+14173997..14175854retrotransposon protein, putative, unclassified
LOC_Os08g23654Os.45161.1.A1_x_at3/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654Os.45974.1.A1_at2/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.13882.2.S1_at2/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.22699.1.S1_x_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.30486.1.S1_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23654OsAffx.593.1.S1_at1/118+14179195..14186800retrotransposon protein, putative, unclassified
LOC_Os08g23670NANA8+14186856..14187658hypothetical protein
LOC_Os08g23680Os.14860.1.S1_at11/118+14188455..14195291FHA domain containing protein, expressed
LOC_Os08g23690OsAffx.17116.1.S1_at11/118+14195712..14196149hypothetical protein
LOC_Os08g23700Os.53734.1.S1_at10/118+14198165..14205514transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g23710Os.4696.1.S1_at11/118+14207673..1421009760S ribosomal protein L7a, putative, expressed
LOC_Os08g23720Os.30016.1.S1_at11/118+14216532..14221737Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14860.1.S1_at--1085--7651Chr08:14193011..14193035 (25 bp)
GGGATACTGTTCCACAACTATTGGG
LOC_Os08g23680
Os.14860.1.S1_at--644--4171Chr08:14192986..14193010 (25 bp)
CCCATCTTGGGCATACAGGTCGGAT
LOC_Os08g23680
Os.14860.1.S1_at--956--5631Chr08:14192880..14192904 (25 bp)
GACTTGTTTGGTGACTTGTGACTGT
LOC_Os08g23680
Os.14860.1.S1_at--603--11Chr08:14192741..14192765 (25 bp)
ATTAAGGTAATCTCTTTTGCCTAAT
LOC_Os08g23680
Os.14860.1.S1_at--305--4951Chr08:14192705..14192729 (25 bp)
GCATTTTTATGACGGTGTTCACAGT
LOC_Os08g23680
Os.14860.1.S1_at--689--10331Chr08:14192670..14192694 (25 bp)
TTTAATTGCTTTCTTCACCATGTCC
LOC_Os08g23680
Os.14860.1.S1_at--716--3511Chr08:14192652..14192676 (25 bp)
CATGTCCTCTTGTGGTGATTTTTTC
LOC_Os08g23680
Os.14860.1.S1_at--1091--8811Chr08:14192637..14192661 (25 bp)
TGATTTTTTCCCTTACCCAGTCTAG
LOC_Os08g23680
Os.14860.1.S1_at--780--10451Chr08:14192625..14192649 (25 bp)
TTACCCAGTCTAGCTTTCCAAAATT
LOC_Os08g23680
Os.14860.1.S1_at--473--2991Chr08:14192561..14192585 (25 bp)
AATGTTCTGAACTTTCCTGTGGTAA
LOC_Os08g23680
Os.14860.1.S1_at--29--2251Chr08:14192537..14192561 (25 bp)
AAATTCTAACTGTACATCATCTGTG
LOC_Os08g23680
Target Sequence 
GGGATACTGTTCCACAACTATTGGGGCCCATCTTGGGCATACAGGTCGGATGACCAGGCAGAAAAAGTCAAAGCTGCTGA
TGAAAAGAAGTCTAGTGGGAATATGGATACAAATTCAGCTGATGATAATGATGACTTGTTTGGTGACTTGTGACTGTTGG
CGTTTTCAATTAGTACAGAGAAATGGATCTCCTGAAAATGCTTAAGAGCAGAAGTATTTTGTTCTGTCGGGGGTATTTTG
CTTTGTTCTGCATGATTGTATCCTGCTGCAAATTAAGGTAATCTCTTTTGCCTAATGTTTAGGGCATGCATTTTTATGAC
GGTGTTCACAGTGATTGGTGAGTTTAATTGCTTTCTTCACCATGTCCTCTTGTGGTGATTTTTTCCCTTACCCAGTCTAG
CTTTCCAAAATTTATGAATTATATTTCATATTTTAATCGTTTGCTTTTTCAAATGTTCTGAACTTTCCTGTGGTAAAATT
CTAACTGTACATCATCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis