Browse Element(s) Details


OsAffx.5904.1.S1_at

Description tigr:9636.m02299
TID=OsAffx.5904.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2356011/11hypothetical protein
LOC_Os08g236403/11retrotransposon protein, putative, unclassified
LOC_Os07g169392/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23510NANA8+14100569..14104965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23520OsAffx.29317.1.S1_at11/118+14105533..14106306hypothetical protein
LOC_Os08g23530NANA8+14113820..14114563retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23540Os.48015.1.A1_x_at1/118+14117945..14120185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23550OsAffx.29318.1.S1_at11/118+14122871..14123188hypothetical protein
LOC_Os08g23560OsAffx.5904.1.S1_at11/118+14125457..14126229hypothetical protein
LOC_Os08g23570OsAffx.5905.1.S1_at10/118+14127657..14130663B3 DNA binding domain containing protein
LOC_Os08g23580Os.47463.1.S1_x_at3/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580Os.14491.2.S1_x_at3/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580OsAffx.13304.1.S1_at2/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580Os.27037.1.A1_at1/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23580OsAffx.5804.1.S1_at1/118+14134806..14143095transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23590OsAffx.17115.1.S1_at11/118+14143913..14150421hypothetical protein
LOC_Os08g23590Os.53409.1.A1_at1/118+14143913..14150421hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5904.1.S1_at--271--3392Chr07:9968272..9968579 (25 bp)
CAGCTGGTTGGAGGAGTGCCTCTAT
NONE
OsAffx.5904.1.S1_at--601--6112Chr07:9968569..9968592 (24 bp)
GAGTGCCTCTATGGGTAGGGAAAAA
NONE
OsAffx.5904.1.S1_at--603--10331Chr08:14125844..14125868 (25 bp)
TTTAGGATGTAATAGATTGCCGGAA
LOC_Os08g23560
OsAffx.5904.1.S1_at--396--291Chr08:14125833..14125857 (25 bp)
ATAGATTGCCGGAAATTGGCGTGAT
LOC_Os08g23560
OsAffx.5904.1.S1_at--209--9012Chr07:9968633..9968656 (24 bp)
TGAATGATGGCAACGACATCGTGCT
LOC_Os07g16939
OsAffx.5904.1.S1_at--747--7312Chr08:14174044..14174068 (25 bp)
GTGCTCGCCATCAACATGTCTCCAG
LOC_Os08g23640
OsAffx.5904.1.S1_at--889--372Chr08:14174035..14174059 (25 bp)
ATCAACATGTCTCCAGGCCTACCTA
LOC_Os08g23640
OsAffx.5904.1.S1_at--417--892Chr08:14174021..14174045 (25 bp)
AGGCCTACCTACTCGGCAGCTTCAG
LOC_Os08g23640
OsAffx.5904.1.S1_at--55--9452Chr08:14173772..14174033 (25 bp)
TCGGCAGCTTCAGTGTCCACGAAAA
NONE
OsAffx.5904.1.S1_at--501--7458Chr07:9968986..9969010 (25 bp)
GTGTCCACGAAAAGATTCACGATCT
LOC_Os07g16939
OsAffx.5904.1.S1_at--240--6578Chr09:20225301..20225321 (21 bp)
GATTCACGATCTTCGGATGTCTCAC
NONE
Target Sequence 
CAGCTGGTTGGAGGAGTGCCTCTATGGGTAGGGAAAAATTTAGGATGTAATAGATTGCCGGAAATTGGCGTGATGGTGAA
TGATGGCAACGACATCGTGCTCGCCATCAACATGTCTCCAGGCCTACCTACTCGGCAGCTTCAGTGTCCACGAAAAGATT
CACGATCTTCGGATGTCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5904.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis