Browse Element(s) Details


Os.15669.1.S1_at

Description gb:AK065219.1
DB_XREF= gi:32975237
TID=Os.15669.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15669 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002G12, full insert sequence.
FL= gb:AK065219.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2373011/11GMP synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23700Os.53734.1.S1_at10/118+14198165..14205514transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g23710Os.4696.1.S1_at11/118+14207673..1421009760S ribosomal protein L7a, putative, expressed
LOC_Os08g23720Os.30016.1.S1_at11/118+14216532..14221737Glycosyl hydrolases family 17 protein, expressed
LOC_Os08g23730Os.15669.1.S1_at11/118+14224138..14227984GMP synthase, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_x_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23750OsAffx.29320.1.S1_at11/118+14234271..14234814hypothetical protein
LOC_Os08g23754Os.50306.1.S1_at11/118+14239722..14244173expressed protein
LOC_Os08g23754Os.47870.1.S1_at10/118+14239722..14244173expressed protein
LOC_Os08g23760NANA8+14247040..14250267retrotransposon protein, putative, unclassified
LOC_Os08g23770Os.33601.3.S1_x_at2/118+14250874..14262006retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003922molecular_functionGMP synthase (glutamine-hydrolyzing) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15669.1.S1_at--1116--5171Chr08:14226715..14226739 (25 bp)
GCAATGCTTTGGAGGTTCTTCGTCA
LOC_Os08g23730
Os.15669.1.S1_at--329--5971Chr08:14226934..14226958 (25 bp)
GAGAACTCACTCCAATGCAGTTGCT
LOC_Os08g23730
Os.15669.1.S1_at--125--171Chr08:14227577..14227601 (25 bp)
ATTATTTTGAGCGTGAGTTCCTGGT
LOC_Os08g23730
Os.15669.1.S1_at--37--6051Chr08:14227591..14227615 (25 bp)
GAGTTCCTGGTAGATGTGGTCAACA
LOC_Os08g23730
Os.15669.1.S1_at--155--7511Chr08:14227606..14227630 (25 bp)
GTGGTCAACAAGATCTGCAACAATG
LOC_Os08g23730
Os.15669.1.S1_at--289--8791Chr08:14227638..14227662 (25 bp)
TGTTAACCGTGTTGTCCAGGACATC
LOC_Os08g23730
Os.15669.1.S1_at--27--5151Chr08:14227665..14227689 (25 bp)
GCAAAAGCCACCTGCGACAGTGGAA
LOC_Os08g23730
Os.15669.1.S1_at--348--951Chr08:14227697..14227721 (25 bp)
AGGAACTTCGTGCTCTGAATTCTGA
LOC_Os08g23730
Os.15669.1.S1_at--498--3151Chr08:14227714..14227738 (25 bp)
AATTCTGATGCCGTGGAGTGGCCTA
LOC_Os08g23730
Os.15669.1.S1_at--457--8031Chr08:14227728..14227752 (25 bp)
GGAGTGGCCTACTTTTATGCTGCAA
LOC_Os08g23730
Os.15669.1.S1_at--222--2271Chr08:14227831..14227855 (25 bp)
AAATCCCTATTTGTCAACCTGTGAT
LOC_Os08g23730
Target Sequence 
GCAATGCTTTGGAGGTTCTTCGTCAGGTTGATGAAATATTTGTTCAAGCCATTAAAGATGCAGGTCTCTATGATATAATT
TGGCAAGCATTTGCTGTGTTTTTGCCTGTACAAACAGTGGGAGTTCAGGGTGACCAGAGAACTCACTCCAATGCAGTTGC
TTTGAGGGCAATTACTAGTGAGGATGGCATGACTGCAGATTGGTATTATTTTGAGCGTGAGTTCCTGGTAGATGTGGTCA
ACAAGATCTGCAACAATGTGCGAGGTGTTAACCGTGTTGTCCAGGACATCACGCAAAAGCCACCTGCGACAGTGGAATGG
GAATAGGAACTTCGTGCTCTGAATTCTGATGCCGTGGAGTGGCCTACTTTTATGCTGCAATGGAGTGGGAATATCAACAT
ATTCCCATATTATACATATAGCTGTTTATTACTAGATTGTTTGTTTACATCCTTTGACAAATCCCTATTTGTCAACCTGT
GAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis