Browse Element(s) Details


OsAffx.17117.1.S1_at

Description tigr:9636.m02318
TID=OsAffx.17117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PA domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2374011/11subtilisin-like protease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23700Os.53734.1.S1_at10/118+14198165..14205514transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g23710Os.4696.1.S1_at11/118+14207673..1421009760S ribosomal protein L7a, putative, expressed
LOC_Os08g23720Os.30016.1.S1_at11/118+14216532..14221737Glycosyl hydrolases family 17 protein, expressed
LOC_Os08g23730Os.15669.1.S1_at11/118+14224138..14227984GMP synthase, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23740OsAffx.17117.1.S1_x_at11/118+14229835..14233602subtilisin-like protease, putative, expressed
LOC_Os08g23750OsAffx.29320.1.S1_at11/118+14234271..14234814hypothetical protein
LOC_Os08g23754Os.50306.1.S1_at11/118+14239722..14244173expressed protein
LOC_Os08g23754Os.47870.1.S1_at10/118+14239722..14244173expressed protein
LOC_Os08g23760NANA8+14247040..14250267retrotransposon protein, putative, unclassified
LOC_Os08g23770Os.33601.3.S1_x_at2/118+14250874..14262006retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009733biological_processresponse to auxin stimulus
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0010102biological_processlateral root morphogenesis
GO:0005576cellular_componentextracellular region
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
GO:0004291molecular_functionsubtilisin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17117.1.S1_at--1080--4151Chr08:14233085..14233109 (25 bp)
CGCCGATGCGCGACCACGACGGGAG
LOC_Os08g23740
OsAffx.17117.1.S1_at--529--9491Chr08:14233187..14233211 (25 bp)
TCTCCAAGGAGGACTACTTCGTCTT
LOC_Os08g23740
OsAffx.17117.1.S1_at--216--4371Chr08:14233190..14233214 (25 bp)
CCAAGGAGGACTACTTCGTCTTCCT
LOC_Os08g23740
OsAffx.17117.1.S1_at--852--791Chr08:14233222..14233246 (25 bp)
ATGGGGTTCAACTCCAGCGACCTCG
LOC_Os08g23740
OsAffx.17117.1.S1_at--369--9331Chr08:14233244..14233268 (25 bp)
TCGCCAAGCTGAGTGCCGGCAACTT
LOC_Os08g23740
OsAffx.17117.1.S1_at--279--4391Chr08:14233246..14233270 (25 bp)
GCCAAGCTGAGTGCCGGCAACTTCA
LOC_Os08g23740
OsAffx.17117.1.S1_at--936--5131Chr08:14233262..14233286 (25 bp)
GCAACTTCACCTGCCCGGAGAAGGT
LOC_Os08g23740
OsAffx.17117.1.S1_at--818--4531Chr08:14233274..14233298 (25 bp)
GCCCGGAGAAGGTCCCGCCGATGGA
LOC_Os08g23740
OsAffx.17117.1.S1_at--165--6751Chr08:14233479..14233503 (25 bp)
GTTCAAGGTGACGTTCAAGTCGGAG
LOC_Os08g23740
OsAffx.17117.1.S1_at--405--9871Chr08:14233525..14233549 (25 bp)
TACGTCTTCGGGAGGCTCGTCTGGT
LOC_Os08g23740
OsAffx.17117.1.S1_at--671--8011Chr08:14233535..14233559 (25 bp)
GGAGGCTCGTCTGGTCGGATGGGAC
LOC_Os08g23740
Target Sequence 
CGCCGATGCGCGACCACGACGGGAGGGAGGCGACGGCGTTCGCGTTCGGCGCCGGCAACATCCACCCGAACCGCGCCGTC
GACCCGGGCCTCGTCTACGACCTCTCCAAGGAGGACTACTTCGTCTTCCTCTGCTCCATGGGGTTCAACTCCAGCGACCT
CGCCAAGCTGAGTGCCGGCAACTTCACCTGCCCGGAGAAGGTCCCGCCGATGGAGGACCTCAACTACCCGTCCATCGTGG
TGCCGGCGCTGCGGCACACGTCGACGGTGGCGCGGCGGCTCAAGTGCGTCGGCCGGCCGGCGACGTACCGCGCGACGTGG
CGCGCCCCGTACGGGGTCAACATGACGGTGGAGCCGGCGGCGCTGGAGTTCGGCAAGGACGGCGAGGTGAAGGAGTTCAA
GGTGACGTTCAAGTCGGAGAAGGACAAGCTCGGCAAGGGCTACGTCTTCGGGAGGCTCGTCTGGTCGGATGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis