Browse Element(s) Details

Os.38505.1.S1_x_at

Description

gb:BI797848
DB_XREF= gi:15849572
DB_XREF=H089A12
CLONE=H089A12
TID=Os.38505.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.38505 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g55730	2/11	expressed protein
LOC_Os11g33000	1/11	prolamin, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g55690	OsAffx.22940.5.S1_at	11/11	3	+	31642555..31646748	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690	OsAffx.22940.1.S1_s_at	7/11	3	+	31642555..31646748	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690	OsAffx.22940.5.S1_x_at	7/11	3	+	31642555..31646748	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690	Os.35344.3.S1_x_at	5/11	3	+	31642555..31646748	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690	Os.35344.18.S1_x_at	4/11	3	+	31642555..31646748	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690	OsAffx.22940.2.S1_s_at	3/11	3	+	31642555..31646748	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690	Os.38172.1.S1_x_at	2/11	3	+	31642555..31646748	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55690	Os.43567.1.S1_x_at	1/11	3	+	31642555..31646748	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g55704	OsAffx.13497.1.S1_s_at	11/11	3	+	31654897..31660831	expressed protein
LOC_Os03g55704	Os.50619.1.S1_x_at	1/11	3	+	31654897..31660831	expressed protein
LOC_Os03g55704	OsAffx.4992.1.S1_at	1/11	3	+	31654897..31660831	expressed protein
LOC_Os03g55704	Os.50619.1.S1_at	1/11	3	+	31654897..31660831	expressed protein
LOC_Os03g55704	Os.50196.2.S1_x_at	1/11	3	+	31654897..31660831	expressed protein
LOC_Os03g55720	Os.12837.1.S1_at	11/11	3	+	31664100..31664825	cytochrome b6f complex subunit, putative, expressed
LOC_Os03g55730	Os.11614.1.S1_s_at	11/11	3	+	31664942..31671202	expressed protein
LOC_Os03g55730	OsAffx.25725.1.S1_at	11/11	3	+	31664942..31671202	expressed protein
LOC_Os03g55730	Os.11519.1.S1_a_at	11/11	3	+	31664942..31671202	expressed protein
LOC_Os03g55730	OsAffx.25725.2.S1_s_at	11/11	3	+	31664942..31671202	expressed protein
LOC_Os03g55730	Os.11519.2.S1_x_at	11/11	3	+	31664942..31671202	expressed protein
LOC_Os03g55730	Os.38505.1.S1_x_at	2/11	3	+	31664942..31671202	expressed protein
LOC_Os03g55734	Os.13536.1.S1_at	11/11	3	+	31671456..31671989	prolamin, putative, expressed
LOC_Os03g55734	Os.11519.2.S1_x_at	1/11	3	+	31671456..31671989	prolamin, putative, expressed
LOC_Os03g55740	NA	NA	3	+	31674717..31675175	prolamin, putative, expressed
LOC_Os03g55750	OsAffx.6388.1.S1_x_at	11/11	3	+	31684561..31686391	hypothetical protein
LOC_Os03g55750	OsAffx.6388.1.S1_at	11/11	3	+	31684561..31686391	hypothetical protein
LOC_Os03g55760	Os.55608.1.S1_at	11/11	3	+	31688428..31694221	myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55770	Os.428.1.S1_at	2/11	3	+	31694949..31695203	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.38505.1.S1_x_at--163--331	1	NONE	CACAACGTTGGCATGGTAGCTCCAC	NONE
Os.38505.1.S1_x_at--296--189	1	NONE	ACGTTGGCATGGTAGCTCCACACCA	NONE
Os.38505.1.S1_x_at--215--405	1	NONE	CGTTGGCATGGTAGCTCCACACCAT	NONE
Os.38505.1.S1_x_at--588--661	1	NONE	GTTGGCATGGTAGCTCCACACCATG	NONE
Os.38505.1.S1_x_at--200--1087	1	NONE	TTGGCATGGTAGCTCCACACCATGT	NONE
Os.38505.1.S1_x_at--48--849	1	NONE	TGGCATGGTAGCTCCACACCATGTT	NONE
Os.38505.1.S1_x_at--578--827	1	NONE	GGCATGGTAGCTCCACACCATGTTC	NONE
Os.38505.1.S1_x_at--1161--499	1	NONE	GCATGGTAGCTCCACACCATGTTCA	NONE
Os.38505.1.S1_x_at--496--859	1	NONE	TGGTAGCTCCACACCATGTTCATGT	NONE
Os.38505.1.S1_x_at--129--1001	1	Chr03:31668899..31668924 (25 bp)	TAGCTCCACACCATGTTCATGTCGC	LOC_Os03g55730
Os.38505.1.S1_x_at--620--633	2	Chr11:19008217..19008241 (25 bp)	GATGCAGATGCCATACATGTGCAAC	LOC_Os11g33000

Target Sequence

CACAACGTTGGCATGGTAGCTCCACACCATGTTCATGTCGCNNCCCATGGCGCTCCTGCAGCAGCNATGNNNNNNNNNNN
NNNNNAGNCNTGATGCCTCAGTGCCCCNNNGTGGCCNCCNNTNCCNAGANTGATNCNNGANGCANNCCANNCAGTTATTT
GTGCTGGACTCGGNCNNCCNCNAGATGATGAAGATGGCGATGCAGATGCCATACATGTGCAAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis