Browse Element(s) Details


Os.55608.1.S1_at

Description gb:AK108408.1
DB_XREF= gi:32993617
TID=Os.55608.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-G11, full insert sequence.
FL= gb:AK108408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5576011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55720Os.12837.1.S1_at11/113+31664100..31664825cytochrome b6f complex subunit, putative, expressed
LOC_Os03g55730Os.11614.1.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.1.S1_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.1.S1_a_at11/113+31664942..31671202expressed protein
LOC_Os03g55730OsAffx.25725.2.S1_s_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.11519.2.S1_x_at11/113+31664942..31671202expressed protein
LOC_Os03g55730Os.38505.1.S1_x_at2/113+31664942..31671202expressed protein
LOC_Os03g55734Os.13536.1.S1_at11/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55734Os.11519.2.S1_x_at1/113+31671456..31671989prolamin, putative, expressed
LOC_Os03g55740NANA3+31674717..31675175prolamin, putative, expressed
LOC_Os03g55750OsAffx.6388.1.S1_x_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55750OsAffx.6388.1.S1_at11/113+31684561..31686391hypothetical protein
LOC_Os03g55760Os.55608.1.S1_at11/113+31688428..31694221myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55770Os.428.1.S1_at2/113+31694949..31695203expressed protein
LOC_Os03g55784Os.4995.1.S1_at7/113+31697109..31700416expressed protein
LOC_Os03g55784Os.8266.2.S1_at7/113+31697109..31700416expressed protein
LOC_Os03g55800Os.8266.1.A1_at11/113+31703932..31705926Cytochrome P450 74A1, chloroplast precursor, putative, expressed
LOC_Os03g55810NANA3+31714944..31715444hypothetical protein
LOC_Os03g55820Os.7451.1.S1_at11/113+31717263..31720334Thioredoxin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009887biological_processorgan morphogenesis
GO:0009956biological_processradial pattern formation
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010158biological_processabaxial cell fate specification
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55608.1.S1_at--309--991Chr03:31693342..31693366 (25 bp)
AGGAGGACTGACCAAACGCCAGCGC
LOC_Os03g55760
Os.55608.1.S1_at--169--7451Chr03:31693376..31693400 (25 bp)
GTGTCGCGATTGTTGACTCGTTGCA
LOC_Os03g55760
Os.55608.1.S1_at--552--9391Chr03:31693393..31693417 (25 bp)
TCGTTGCACCGGTGTCAGAAGCATA
LOC_Os03g55760
Os.55608.1.S1_at--287--4951Chr03:31693413..31693437 (25 bp)
GCATAACTACTCACCAGTGCTTCAA
LOC_Os03g55760
Os.55608.1.S1_at--843--1251Chr03:31693870..31693894 (25 bp)
AGATCATCTTATTACCGGGAACCTA
LOC_Os03g55760
Os.55608.1.S1_at--2--6191Chr03:31693902..31693926 (25 bp)
GAGGAGCATCAGCACAAGCGAGCAT
LOC_Os03g55760
Os.55608.1.S1_at--212--1651Chr03:31693918..31693942 (25 bp)
AGCGAGCATTGAGGCCATGGCGACT
LOC_Os03g55760
Os.55608.1.S1_at--715--1591Chr03:31693995..31694019 (25 bp)
AGCTGCTACCTGAAGACTCGTTTGC
LOC_Os03g55760
Os.55608.1.S1_at--553--4191Chr03:31694037..31694061 (25 bp)
CCCTCGGGAGACATAACTGGAACAT
LOC_Os03g55760
Os.55608.1.S1_at--1040--8091Chr03:31694062..31694086 (25 bp)
GGACCATCCTGAAGAACTCAGCCTG
LOC_Os03g55760
Os.55608.1.S1_at--455--6831Chr03:31694138..31694162 (25 bp)
GTTTCACTCCACTAACCATTGATGA
LOC_Os03g55760
Target Sequence 
AGGAGGACTGACCAAACGCCAGCGCTGGAAAAGGGTGTCGCGATTGTTGACTCGTTGCACCGGTGTCAGAAGCATAACTA
CTCACCAGTGCTTCAAGATGCTCTTCATCAGGGAGCTGAAGAAGATCATCTTATTACCGGGAACCTACCAATGGGAGGAG
CATCAGCACAAGCGAGCATTGAGGCCATGGCGACTACCAACTCTTCAAGCCCTGCAAGCTCATCTCCATCACTTGCAAGC
CTGGAGCAGCTGCTACCTGAAGACTCGTTTGCGCCCAACCTGGAGATCTCCCTCGGGAGACATAACTGGAACATGGACCA
TCCTGAAGAACTCAGCCTGAAATACCTGTGAAAAAAGCCAAAAAAAAAAAGAGGTTTTTCTCTCCTCTGGGTTTCACTCC
ACTAACCATTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis