Browse Element(s) Details


OsAffx.19135.1.S1_at

Description tigr:9639.m03002
TID=OsAffx.19135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3299011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32950NANA11+18974231..18975112hypothetical protein
LOC_Os11g32960Os.52935.1.S1_at11/1111+18980146..18982722DHHC zinc finger domain containing protein, expressed
LOC_Os11g32970OsAffx.31278.1.S1_at11/1111+18983843..18986605SWIM zinc finger family protein
LOC_Os11g32980OsAffx.29272.2.S1_x_at8/1111+18987191..18990734calcineurin-like phosphoesterase family protein, putative
LOC_Os11g32980OsAffx.29272.3.S1_x_at8/1111+18987191..18990734calcineurin-like phosphoesterase family protein, putative
LOC_Os11g32990OsAffx.19135.1.S1_at11/1111+18997868..18998298hypothetical protein
LOC_Os11g33000Os.11519.1.S1_a_at9/1111+19007782..19008414prolamin, putative, expressed
LOC_Os11g33000Os.11519.2.S1_x_at6/1111+19007782..19008414prolamin, putative, expressed
LOC_Os11g33000Os.38505.1.S1_x_at1/1111+19007782..19008414prolamin, putative, expressed
LOC_Os11g33010Os.26886.1.S1_x_at7/1111+19010714..19013605transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33010Os.26886.3.S1_x_at5/1111+19010714..19013605transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33020Os.26886.2.S1_s_at7/1111+19016431..19019526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33020Os.26886.6.S1_s_at5/1111+19016431..19019526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33020OsAffx.16467.1.S1_at4/1111+19016431..19019526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33030Os.53931.1.S1_at11/1111+19022276..19023743C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19135.1.S1_at--416--3731Chr11:18998221..18998245 (25 bp)
CTACATCAACCGATCGTACCGATCT
LOC_Os11g32990
OsAffx.19135.1.S1_at--191--4051Chr11:18998211..18998235 (25 bp)
CGATCGTACCGATCTGTCCGTCGAC
LOC_Os11g32990
OsAffx.19135.1.S1_at--610--5771Chr11:18998189..18998213 (25 bp)
GACGAGAAGATCGAGATGATAATCT
LOC_Os11g32990
OsAffx.19135.1.S1_at--690--211Chr11:18998040..18998192 (25 bp)
ATCTAAGTGGGGATTTTCTTCTTGC
LOC_Os11g32990
OsAffx.19135.1.S1_at--288--9571Chr11:18998012..18998036 (25 bp)
TCTTCAGAAACATAGTGGTGCACCT
LOC_Os11g32990
OsAffx.19135.1.S1_at--224--291Chr11:18998001..18998025 (25 bp)
ATAGTGGTGCACCTATACCATTCGA
LOC_Os11g32990
OsAffx.19135.1.S1_at--469--7771Chr11:18997996..18998020 (25 bp)
GGTGCACCTATACCATTCGAGGAGT
LOC_Os11g32990
OsAffx.19135.1.S1_at--355--1731Chr11:18997991..18998015 (25 bp)
ACCTATACCATTCGAGGAGTCGCAA
LOC_Os11g32990
OsAffx.19135.1.S1_at--458--1731Chr11:18997985..18998009 (25 bp)
ACCATTCGAGGAGTCGCAAATCCTT
LOC_Os11g32990
OsAffx.19135.1.S1_at--815--6171Chr11:18997978..18998002 (25 bp)
GAGGAGTCGCAAATCCTTGAATATT
LOC_Os11g32990
OsAffx.19135.1.S1_at--685--2251Chr11:18997948..18997972 (25 bp)
AAATTTTTGGCCCAGTACTCTGACT
LOC_Os11g32990
Target Sequence 
CTACATCAACCGATCGTACCGATCTGTCCGTCGACGAGAAGATCGAGATGATAATCTAAGTGGGGATTTTCTTCTTGCTG
TTCTTCAGAAACATAGTGGTGCACCTATACCATTCGAGGAGTCGCAAATCCTTGAATATTACAAGAAATTTTTGGCCCAG
TACTCTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis