Browse Element(s) Details


Os.53931.1.S1_at

Description gb:AK100890.1
DB_XREF= gi:32986099
TID=Os.53931.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023130A16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023130A16, full insert sequence.
FL= gb:AK100890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3303011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32990OsAffx.19135.1.S1_at11/1111+18997868..18998298hypothetical protein
LOC_Os11g33000Os.11519.1.S1_a_at9/1111+19007782..19008414prolamin, putative, expressed
LOC_Os11g33000Os.11519.2.S1_x_at6/1111+19007782..19008414prolamin, putative, expressed
LOC_Os11g33000Os.38505.1.S1_x_at1/1111+19007782..19008414prolamin, putative, expressed
LOC_Os11g33010Os.26886.1.S1_x_at7/1111+19010714..19013605transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33010Os.26886.3.S1_x_at5/1111+19010714..19013605transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33020Os.26886.2.S1_s_at7/1111+19016431..19019526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33020Os.26886.6.S1_s_at5/1111+19016431..19019526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33020OsAffx.16467.1.S1_at4/1111+19016431..19019526transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33030Os.53931.1.S1_at11/1111+19022276..19023743C2 domain containing protein, expressed
LOC_Os11g33040OsAffx.7282.1.S1_at10/1111+19027282..19028799hypothetical protein
LOC_Os11g33050OsAffx.7283.1.S1_at9/1111+19032360..19033202expressed protein
LOC_Os11g33060NANA11+19043587..19046715retrotransposon protein, putative, unclassified
LOC_Os11g33070NANA11+19047200..19053350retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0000904biological_processcellular morphogenesis during differentiation
GO:0009826biological_processunidimensional cell growth
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0009927molecular_functionhistidine phosphotransfer kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53931.1.S1_at--1021--1871Chr11:19023179..19023203 (25 bp)
ACGTGACGCAAAGCTTCGCACCAAA
LOC_Os11g33030
Os.53931.1.S1_at--419--2351Chr11:19023188..19023212 (25 bp)
AAAGCTTCGCACCAAACAGCAGCTA
LOC_Os11g33030
Os.53931.1.S1_at--988--8031Chr11:19023354..19023378 (25 bp)
GGAGTCAGCCTCATCGCAGTATCCA
LOC_Os11g33030
Os.53931.1.S1_at--552--4671Chr11:19023517..19023541 (25 bp)
GCGGGAGCGCCGTACAGCTTGTACC
LOC_Os11g33030
Os.53931.1.S1_at--657--1791Chr11:19023546..19023570 (25 bp)
ACCCGGGACTCGCTACTTGTAGATG
LOC_Os11g33030
Os.53931.1.S1_at--374--6531Chr11:19023588..19023612 (25 bp)
GATTTGAGCTTTGCGTATATCACAA
LOC_Os11g33030
Os.53931.1.S1_at--244--5211Chr11:19023624..19023648 (25 bp)
GAATTGAATTCTGCTTTTCATCAAA
LOC_Os11g33030
Os.53931.1.S1_at--1036--7911Chr11:19023665..19023689 (25 bp)
GGATTCGATCTGTAAATTAACTGTG
LOC_Os11g33030
Os.53931.1.S1_at--753--7351Chr11:19023687..19023711 (25 bp)
GTGAATGCTTTAATCGCCAGGACGG
LOC_Os11g33030
Os.53931.1.S1_at--573--9311Chr11:19023700..19023724 (25 bp)
TCGCCAGGACGGGAACAATGAATTG
LOC_Os11g33030
Os.53931.1.S1_at--272--5211Chr11:19023719..19023743 (25 bp)
GAATTGATCTTGTGGATTTGTGAGC
LOC_Os11g33030
Target Sequence 
ACGTGACGCAAAGCTTCGCACCAAACAGCAGCTACCGGCCGCCGCCTCCTCCGTCGCAGTACATCGCCGGCTACCCGCCG
CCACCACCGAGCAACTTCTACCCGCCACCGCCGGCAGGCTACCCGGCGCCCAGTTTCCCCTCTCCGACGAGCACCTACCC
GCCACCGCCGCCGCCGGAGTCAGCCTCATCGCAGTATCCACCACCACTGCCAAGATCGGCGCCATGCTGCGATCGCTCGG
TGGACCGTGCGCTGCCGTCGTACATGTCGCCGCGTCCGCCGCCGCCCGGCGCGCCGTGCTACCCCCCGCCGGCGGCGTGG
TTGCCGGATCAAGAAGCGGCGGGAGCGCCGTACAGCTTGTACCCCCAACCCGGGACTCGCTACTTGTAGATGATGAATTC
TGCTAAATTGATTTGAGCTTTGCGTATATCACAAATTCACAAGTTGAATTGAATTCTGCTTTTCATCAAAAGAAAAGGAA
AGAGTTGGATTCGATCTGTAAATTAACTGTGAATGCTTTAATCGCCAGGACGGGAACAATGAATTGATCTTGTGGATTTG
TGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis