Browse Element(s) Details


Os.52935.1.S1_at

Description gb:AK069995.1
DB_XREF= gi:32980019
TID=Os.52935.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52935 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037B09, full insert sequence.
FL= gb:AK069995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3296011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32950NANA11+18974231..18975112hypothetical protein
LOC_Os11g32960Os.52935.1.S1_at11/1111+18980146..18982722DHHC zinc finger domain containing protein, expressed
LOC_Os11g32970OsAffx.31278.1.S1_at11/1111+18983843..18986605SWIM zinc finger family protein
LOC_Os11g32980OsAffx.29272.2.S1_x_at8/1111+18987191..18990734calcineurin-like phosphoesterase family protein, putative
LOC_Os11g32980OsAffx.29272.3.S1_x_at8/1111+18987191..18990734calcineurin-like phosphoesterase family protein, putative
LOC_Os11g32990OsAffx.19135.1.S1_at11/1111+18997868..18998298hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52935.1.S1_at--1158--6931Chr11:18980590..18980614 (25 bp)
GTCAGGAAGGCCGACGACGTCCCGA
LOC_Os11g32960
Os.52935.1.S1_at--26--4511Chr11:18980466..18980490 (25 bp)
GCCGTCGTCTCCAAGTGCGTTGGCG
LOC_Os11g32960
Os.52935.1.S1_at--371--4631Chr11:18980450..18980474 (25 bp)
GCGTTGGCGCCATTTTCTTGGGAGC
LOC_Os11g32960
Os.52935.1.S1_at--1135--4791Chr11:18980427..18980451 (25 bp)
GCTCGACGATGCAACGCAGCTAATT
LOC_Os11g32960
Os.52935.1.S1_at--26--3651Chr11:18980348..18980372 (25 bp)
CTTCCGCTGCTCGTGTGTTGTGTAG
LOC_Os11g32960
Os.52935.1.S1_at--38--6972Chr04:1614934..1615018 (24 bp)
GTAGCTTTGGTTGATCAGCTTCCTC
NONE
Os.52935.1.S1_at--1143--3391Chr11:18980309..18980333 (25 bp)
CAGCTTCCTCATGCTTGCTAATGGA
LOC_Os11g32960
Os.52935.1.S1_at--62--1111Chr11:18980282..18980306 (25 bp)
AGTGGTTTCCATAGCATTCTAGTAC
LOC_Os11g32960
Os.52935.1.S1_at--569--10571Chr11:18980266..18980290 (25 bp)
TTCTAGTACTACTTGCTTAACTTGA
LOC_Os11g32960
Os.52935.1.S1_at--64--7771Chr11:18980232..18980256 (25 bp)
GGTGATGTATACACACACAAATGCA
LOC_Os11g32960
Os.52935.1.S1_at--363--2191Chr11:18980216..18980240 (25 bp)
ACAAATGCACACACACATGGGTTTA
LOC_Os11g32960
Target Sequence 
GTCAGGAAGGCCGACGACGTCCCGACGGAGTTCGGGCACTACGGCGCCGCCGCTGCCGCCGCCGCCGGCGGCGGCGGCGG
CCGGCCTCGCGGGAGGGAGTTCGAGGCCGTGTGACGTCGCCGCCGCCGTCGTCTCCAAGTGCGTTGGCGCCATTTTCTTG
GGAGCTCGACGATGCAACGCAGCTAATTAATCGATCAATTAATGTAGCGAATTTTTCTCTGTTTTTTTTTGGTGATCTTG
TGCTTCCGCTGCTCGTGTGTTGTGTAGTAGCTTTGGTTGATCAGCTTCCTCATGCTTGCTAATGGAGTAGTGGTTTCCAT
AGCATTCTAGTACTACTTGCTTAACTTGATTTAGTGAAGGTGATGTATACACACACAAATGCACACACACATGGGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis