Browse Element(s) Details


OsAffx.29272.2.S1_x_at

Description tigr:9634.m04078
TID=OsAffx.29272.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4224011/11hypothetical protein
LOC_Os11g329808/11calcineurin-like phosphoesterase family protein, putative
LOC_Os08g191907/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42200Os.31312.5.S1_x_at5/116+25333947..25337202retrotransposon protein, putative, unclassified
LOC_Os06g42200Os.31312.2.S1_x_at4/116+25333947..25337202retrotransposon protein, putative, unclassified
LOC_Os06g42210OsAffx.26408.1.S1_x_at11/116+25344436..25345337hypothetical protein
LOC_Os06g42210OsAffx.26408.1.S1_at11/116+25344436..25345337hypothetical protein
LOC_Os06g42220Os.54075.1.S1_at11/116+25346189..25347650Leucine Rich Repeat family protein, expressed
LOC_Os06g42230OsAffx.31278.1.S1_at4/116+25356471..25358930Transposable element protein, putative, MuDR
LOC_Os06g42240OsAffx.29272.2.S1_x_at11/116+25359859..25362118hypothetical protein
LOC_Os06g42240OsAffx.29272.3.S1_x_at6/116+25359859..25362118hypothetical protein
LOC_Os06g42250Os.45173.1.S1_x_at3/116+25370889..25376623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g42260NANA6+25379060..25382437retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g42270OsAffx.15888.1.S1_at9/116+25385656..25388194hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29272.2.S1_x_at--1120--6553Chr11:18987935..18987959 (25 bp)
GATTCTCAATGCTTGGGAGGACTTG
LOC_Os11g32980
OsAffx.29272.2.S1_x_at--1018--8013Chr11:18987920..18987944 (25 bp)
GGAGGACTTGAAAACTCTATCCCAT
LOC_Os11g32980
OsAffx.29272.2.S1_x_at--1039--10133Chr11:18987903..18987927 (25 bp)
TATCCCATACCCTCGAGATAACATG
LOC_Os11g32980
OsAffx.29272.2.S1_x_at--551--5733Chr11:18987873..18987897 (25 bp)
GACTGGGTACATGCCTAGTGGTCCA
LOC_Os11g32980
OsAffx.29272.2.S1_x_at--1047--4173Chr11:18987771..18987871 (25 bp)
CCCTAGCTCGCATTGGATTGCGTGA
LOC_Os11g32980
OsAffx.29272.2.S1_x_at--428--6631Chr06:25360237..25360261 (25 bp)
GTTGTCTGAGGCTGGACTACCAATT
LOC_Os06g42240
OsAffx.29272.2.S1_x_at--438--6313Chr11:18987571..18987595 (25 bp)
GATGACGATGGCACTACTGCTTGCA
LOC_Os11g32980
OsAffx.29272.2.S1_x_at--574--5093Chr11:18987549..18987573 (25 bp)
GCACGCCAAGTCCTCCAAATGAAAG
LOC_Os11g32980
OsAffx.29272.2.S1_x_at--16--6071Chr06:25360061..25360085 (25 bp)
GAGTTCCCACAACACAAGATACAAG
LOC_Os06g42240
OsAffx.29272.2.S1_x_at--1016--6451Chr06:25360044..25360068 (25 bp)
GATACAAGCCAAGTGACTCAATGTT
LOC_Os06g42240
OsAffx.29272.2.S1_x_at--205--9672Chr11:18987283..18987307 (25 bp)
TCAGCTCCATTGCATCCTGGTGAAA
LOC_Os11g32980
Target Sequence 
GATTCTCAATGCTTGGGAGGACTTGAAAACTCTATCCCATACCCTCGAGATAACATGGAGTGGACTGGGTACATGCCTAG
TGGTCCACCCCTAGCTCGCATTGGATTGCGTGAGATTAAAAATGCAGCATGGGGAATCAAATGTTGTATTACTAATGGAT
GCAAGAAGATAGGTAAATCTATATTGATCACATGTCAGGGGAATATTAGGGATCTTAACTTGGAATACAAATTGCAAAAC
ATGTTGTCTGAGGCTGGACTACCAATTAAGGTTGAAGAAATTCAATCTGATGACGATGGCACTACTGCTTGCACGCCAAG
TCCTCCAAATGAAAGTTCCGTTGATGTATTTGATGAGTGGATGATCTCAGGAAAAGGTTTTAGTAGATATATTGATCTAG
GTGTGGAAACTACTAATAGAGTTCCCACAACACAAGATACAAGCCAAGTGACTCAATGTTTGGAAAATGAAGATCTGGTG
GCTTCAAGAGAAGCATCAGCTCCATTGCATCCTGGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29272.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis