Browse Element(s) Details


OsAffx.15888.1.S1_at

Description tigr:9634.m04081
TID=OsAffx.15888.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g422709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42240OsAffx.29272.2.S1_x_at11/116+25359859..25362118hypothetical protein
LOC_Os06g42240OsAffx.29272.3.S1_x_at6/116+25359859..25362118hypothetical protein
LOC_Os06g42250Os.45173.1.S1_x_at3/116+25370889..25376623retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g42260NANA6+25379060..25382437retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g42270OsAffx.15888.1.S1_at9/116+25385656..25388194hypothetical protein
LOC_Os06g42280Os.53485.1.S1_at3/116+25389035..25395160transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42290Os.47463.1.S1_x_at6/116+25396662..25398869transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42290Os.14491.2.S1_x_at5/116+25396662..25398869transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42300NANA6+25403763..25408025retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g42310Os.46702.1.S1_at2/116+25409604..25417249Glycosyl hydrolases family 35 protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15888.1.S1_at--166--331NONE
ATACTGGTATTCTGTCCTACAGCCT
NONE
OsAffx.15888.1.S1_at--769--9851Chr06:25387668..25387692 (25 bp)
TACAGCCTTACCATTACCATTGAGT
LOC_Os06g42270
OsAffx.15888.1.S1_at--1036--7711NONE
GGTGGTTTCACGATCAACAGTTATC
NONE
OsAffx.15888.1.S1_at--342--7131Chr06:25385935..25385959 (25 bp)
GTCATCAAAGGCTAGCGGGTGCTAC
LOC_Os06g42270
OsAffx.15888.1.S1_at--819--4831Chr06:25385915..25385939 (25 bp)
GCTACAGATTGAAGGCCGGCAGGAC
LOC_Os06g42270
OsAffx.15888.1.S1_at--216--5011Chr06:25385897..25385921 (25 bp)
GCAGGACATTCACAAATCGGCGGCT
LOC_Os06g42270
OsAffx.15888.1.S1_at--747--8931Chr06:25385848..25385872 (25 bp)
TGACGACTCGAATGCAGCGTGGATT
LOC_Os06g42270
OsAffx.15888.1.S1_at--329--2911Chr06:25385815..25385839 (25 bp)
AAGGAGGATTCGTGCTCCCACTGGC
LOC_Os06g42270
OsAffx.15888.1.S1_at--660--9311Chr06:25385800..25385824 (25 bp)
TCCCACTGGCTGGAGTTCATTTGGT
LOC_Os06g42270
OsAffx.15888.1.S1_at--131--7251Chr06:25385753..25385777 (25 bp)
GTCCGCCAGCTACGCGTTTAAAGCA
LOC_Os06g42270
OsAffx.15888.1.S1_at--266--8031Chr06:25385689..25385713 (25 bp)
GGAGTGGAACACATCTAGCGACAAC
LOC_Os06g42270
Target Sequence 
ATACTGGTATTCTGTCCTACAGCCTTACCATTACCATTGAGTTCTGCAAACTATGTGGCTTAGAACTTAGGGCCGGGTTG
CCCTTATCGTTTTTGGAGGGTTTACCACCATCCCGCGGTAGGGCGGTTACAGCGGTAACCGCTGAAACCCGGGCAAAATT
TACCTCCAAAAATTTGAATTCAAAAATCGGTGGTTTCACGATCAACAGTTATCTGTTGGTTGGAATTGGGTGGTCATCAA
AGGCTAGCGGGTGCTACAGATTGAAGGCCGGCAGGACATTCACAAATCGGCGGCTGTGCCGGTCCGGCGCCGGGGGTGAT
GACGACTCGAATGCAGCGTGGATTGGACGTCCAAGGAGGATTCGTGCTCCCACTGGCTGGAGTTCATTTGGTGGCTGTGG
GTGGCTGGAAGATCGTCCGCCAGCTACGCGTTTAAAGCAGATCGAAGGCCGATCATCTGCGGCGTGGTCAGGCGCTCGGG
AGTGGAACACATCTAGCGACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis