Browse Element(s) Details


Os.54075.1.S1_at

Description gb:AK101725.1
DB_XREF= gi:32986934
TID=Os.54075.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061C03, full insert sequence.
FL= gb:AK101725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4222011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42180OsAffx.28063.1.S1_at11/116+25321423..25323331hypothetical protein
LOC_Os06g42180OsAffx.24777.1.A1_at1/116+25321423..25323331hypothetical protein
LOC_Os06g42190OsAffx.22492.1.S1_at1/116+25327165..25333319retrotransposon protein, putative, unclassified
LOC_Os06g42190OsAffx.22492.1.S1_x_at1/116+25327165..25333319retrotransposon protein, putative, unclassified
LOC_Os06g42200Os.31312.5.S1_x_at5/116+25333947..25337202retrotransposon protein, putative, unclassified
LOC_Os06g42200Os.31312.2.S1_x_at4/116+25333947..25337202retrotransposon protein, putative, unclassified
LOC_Os06g42210OsAffx.26408.1.S1_x_at11/116+25344436..25345337hypothetical protein
LOC_Os06g42210OsAffx.26408.1.S1_at11/116+25344436..25345337hypothetical protein
LOC_Os06g42220Os.54075.1.S1_at11/116+25346189..25347650Leucine Rich Repeat family protein, expressed
LOC_Os06g42230OsAffx.31278.1.S1_at4/116+25356471..25358930Transposable element protein, putative, MuDR
LOC_Os06g42240OsAffx.29272.2.S1_x_at11/116+25359859..25362118hypothetical protein
LOC_Os06g42240OsAffx.29272.3.S1_x_at6/116+25359859..25362118hypothetical protein
LOC_Os06g42250Os.45173.1.S1_x_at3/116+25370889..25376623retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0008356biological_processasymmetric cell division
GO:0009860biological_processpollen tube growth
GO:0010103biological_processstomatal complex morphogenesis
GO:0016324cellular_componentapical plasma membrane
GO:0031225cellular_componentanchored to membrane
GO:0004872molecular_functionreceptor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54075.1.S1_at--664--1071Chr06:25346750..25346774 (25 bp)
AGGGAGATGTACCTCAGCGGCAACC
LOC_Os06g42220
Os.54075.1.S1_at--825--731Chr06:25346696..25346720 (25 bp)
ATGTTCGCCGGCCTGAAGGGCATCT
LOC_Os06g42220
Os.54075.1.S1_at--800--8031Chr06:25346616..25346640 (25 bp)
GGAGTCGCTGCGCAACGTCACCTAC
LOC_Os06g42220
Os.54075.1.S1_at--1037--4971Chr06:25346458..25346482 (25 bp)
GCATCGCAGGTGTTCCGTCGTGCAA
LOC_Os06g42220
Os.54075.1.S1_at--855--8391Chr06:25346407..25346431 (25 bp)
GGCGCCCTGTGGTTATGCCGGTTCC
LOC_Os06g42220
Os.54075.1.S1_at--240--7911Chr06:25346388..25346412 (25 bp)
GGTTCCCTTGGCATCAGCGGAGAAG
LOC_Os06g42220
Os.54075.1.S1_at--1114--491Chr06:25346330..25346354 (25 bp)
ATCGGTTCCTGTGTCGTAGTGGCAA
LOC_Os06g42220
Os.54075.1.S1_at--523--7211Chr06:25346318..25346342 (25 bp)
GTCGTAGTGGCAATGCTCTTGCTTA
LOC_Os06g42220
Os.54075.1.S1_at--751--10131Chr06:25346295..25346319 (25 bp)
TATGCTCAGTTAGTTGCTCCTGAAT
LOC_Os06g42220
Os.54075.1.S1_at--586--1151Chr06:25346266..25346290 (25 bp)
AGTCAGGCTGTTTAGTTTAGCATTA
LOC_Os06g42220
Os.54075.1.S1_at--766--1211Chr06:25346205..25346229 (25 bp)
AGTTATGGTATTGGTTGTGCTACTA
LOC_Os06g42220
Target Sequence 
AGGGAGATGTACCTCAGCGGCAACCGTCGCCTCGGCGGGCGCGTGCCGGCCGACATGTTCGCCGGCCTGAAGGGCATCTC
CGCCGTGGGCCTCTCCGACGCCGGCCTCACGGGCACGATCCCGGCGTCGCTGGGGGAGTCGCTGCGCAACGTCACCTACC
TGGGGCTGGACGGCAACCTGCTGGAGGGCGAGGTGCCGCCGGCGCTGGCGAAGATGGCGGGCAGGGTCCGGCTTCACGGC
AACCGCGCCGTGTGCATCTCGCCGGAGTTCCTCGCCGGAGCGCCTCGCCCTCGCATCGCAGGTGTTCCGTCGTGCAACGC
CACCCAGGCTGCTCCCGTGACGCGGCGCCCTGTGGTTATGCCGGTTCCCTTGGCATCAGCGGAGAAGCCGGCGGCGGCGG
CGCCGCCGCCGCCGATGAGGATCGGTTCCTGTGTCGTAGTGGCAATGCTCTTGCTTATGCTCAGTTAGTTGCTCCTGAAT
GATTAGTCAGGCTGTTTAGTTTAGCATTAGCAGGTAGATTTTGTTGAGTTAAAAAAATGTAAAGTAGTTATGGTATTGGT
TGTGCTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis