Browse Element(s) Details

OsAffx.28063.1.S1_at

Description

tigr:9634.m04071
TID=OsAffx.28063.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g42180	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g42140	NA	NA	6	+	25303129..25303344	bZIP transcription factor ATB2, putative
LOC_Os06g42150	OsAffx.28062.1.S1_at	11/11	6	+	25304348..25304641	hypothetical protein
LOC_Os06g42160	OsAffx.3280.1.S1_x_at	1/11	6	+	25310355..25311314	retrotransposon protein, putative, unclassified
LOC_Os06g42170	OsAffx.411.1.S1_at	1/11	6	+	25316612..25317078	retrotransposon protein, putative, unclassified
LOC_Os06g42180	OsAffx.28063.1.S1_at	11/11	6	+	25321423..25323331	hypothetical protein
LOC_Os06g42180	OsAffx.24777.1.A1_at	1/11	6	+	25321423..25323331	hypothetical protein
LOC_Os06g42190	OsAffx.22492.1.S1_at	1/11	6	+	25327165..25333319	retrotransposon protein, putative, unclassified
LOC_Os06g42190	OsAffx.22492.1.S1_x_at	1/11	6	+	25327165..25333319	retrotransposon protein, putative, unclassified
LOC_Os06g42200	Os.31312.5.S1_x_at	5/11	6	+	25333947..25337202	retrotransposon protein, putative, unclassified
LOC_Os06g42200	Os.31312.2.S1_x_at	4/11	6	+	25333947..25337202	retrotransposon protein, putative, unclassified
LOC_Os06g42210	OsAffx.26408.1.S1_x_at	11/11	6	+	25344436..25345337	hypothetical protein
LOC_Os06g42210	OsAffx.26408.1.S1_at	11/11	6	+	25344436..25345337	hypothetical protein
LOC_Os06g42220	Os.54075.1.S1_at	11/11	6	+	25346189..25347650	Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28063.1.S1_at--871--163	1	Chr06:25321453..25321477 (25 bp)	AGCGTGGTCATGTGTCATGCCGTCC	LOC_Os06g42180
OsAffx.28063.1.S1_at--791--859	1	Chr06:25321457..25321481 (25 bp)	TGGTCATGTGTCATGCCGTCCGCAC	LOC_Os06g42180
OsAffx.28063.1.S1_at--917--915	1	Chr06:25321520..25321544 (25 bp)	TGCGCGTCGCCGAGACATTAGTGGG	LOC_Os06g42180
OsAffx.28063.1.S1_at--956--835	1	Chr06:25321546..25321570 (25 bp)	GGCGGAGCTCCCATGGATTTCGACG	LOC_Os06g42180
OsAffx.28063.1.S1_at--1089--81	1	Chr06:25321558..25321582 (25 bp)	ATGGATTTCGACGACATAAATAGTA	LOC_Os06g42180
OsAffx.28063.1.S1_at--938--1003	3	Chr12:2090357..2090399 (25 bp)	TAGTATCACTACACACACCAAGGGA	NONE
OsAffx.28063.1.S1_at--90--37	3	Chr12:2090380..2090400 (21 bp)	ATCACTACACACACCAAGGGAAAGG	NONE
OsAffx.28063.1.S1_at--877--273	1	Chr06:25323228..25323248 (21 bp)	AAGAAGAGGTCATGTCTGCCTCCAC	LOC_Os06g42180
OsAffx.28063.1.S1_at--166--337	1	Chr06:25323246..25323270 (25 bp)	CACCGTCGCACTCAGATGTTGGGAT	LOC_Os06g42180
OsAffx.28063.1.S1_at--1137--721	1	Chr06:25323250..25323274 (25 bp)	GTCGCACTCAGATGTTGGGATGTAC	LOC_Os06g42180
OsAffx.28063.1.S1_at--150--127	1	Chr06:25323259..25323283 (25 bp)	AGATGTTGGGATGTACGAGTACGAT	LOC_Os06g42180

Target Sequence

AGCGTGGTCATGTGTCATGCCGTCCGCACCGGCCTCGTCCCCACCCCCAAGCCCCACGCTGATCCCGTGCGCGTCGCCGA
GACATTAGTGGGCGGCGGAGCTCCCATGGATTTCGACGACATAAATAGTATCACTACACACACCAAGGGAAAGGAGAGAA
AAAGAAAGATCAGAACGAAGAAGAGGTCATGTCTGCCTCCACCGTCGCACTCAGATGTTGGGATGTACGAGTACGAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis