Browse Element(s) Details


OsAffx.28062.1.S1_at

Description tigr:9634.m04068
TID=OsAffx.28062.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4215011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42090NANA6+25279478..25282985transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42100NANA6+25288296..25289486hypothetical protein
LOC_Os06g42110OsAffx.28061.1.S1_at11/116+25290574..25291059hypothetical protein
LOC_Os06g42120Os.56146.1.S1_at10/116+25291063..25292336Sulfotransferase domain containing protein, expressed
LOC_Os06g42130Os.2688.1.S1_at3/116+25295198..25296319Leucoanthocyanidin dioxygenase, putative
LOC_Os06g42140NANA6+25303129..25303344bZIP transcription factor ATB2, putative
LOC_Os06g42150OsAffx.28062.1.S1_at11/116+25304348..25304641hypothetical protein
LOC_Os06g42160OsAffx.3280.1.S1_x_at1/116+25310355..25311314retrotransposon protein, putative, unclassified
LOC_Os06g42170OsAffx.411.1.S1_at1/116+25316612..25317078retrotransposon protein, putative, unclassified
LOC_Os06g42180OsAffx.28063.1.S1_at11/116+25321423..25323331hypothetical protein
LOC_Os06g42180OsAffx.24777.1.A1_at1/116+25321423..25323331hypothetical protein
LOC_Os06g42190OsAffx.22492.1.S1_at1/116+25327165..25333319retrotransposon protein, putative, unclassified
LOC_Os06g42190OsAffx.22492.1.S1_x_at1/116+25327165..25333319retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28062.1.S1_at--349--6651Chr06:25304587..25304611 (25 bp)
GTTGTTGATGGCTTCTTCAAGCGGG
LOC_Os06g42150
OsAffx.28062.1.S1_at--733--6651Chr06:25304584..25304608 (25 bp)
GTTGATGGCTTCTTCAAGCGGGAGC
LOC_Os06g42150
OsAffx.28062.1.S1_at--869--10771Chr06:25304583..25304607 (25 bp)
TTGATGGCTTCTTCAAGCGGGAGCA
LOC_Os06g42150
OsAffx.28062.1.S1_at--6--871Chr06:25304580..25304604 (25 bp)
ATGGCTTCTTCAAGCGGGAGCAGGG
LOC_Os06g42150
OsAffx.28062.1.S1_at--402--7831Chr06:25304432..25304456 (25 bp)
GGTCACGGATGCGAAAGCAGAGCCA
LOC_Os06g42150
OsAffx.28062.1.S1_at--537--9691Chr06:25304430..25304454 (25 bp)
TCACGGATGCGAAAGCAGAGCCACC
LOC_Os06g42150
OsAffx.28062.1.S1_at--1100--3951Chr06:25304427..25304451 (25 bp)
CGGATGCGAAAGCAGAGCCACCTCT
LOC_Os06g42150
OsAffx.28062.1.S1_at--885--4991Chr06:25304416..25304440 (25 bp)
GCAGAGCCACCTCTCGACGACCTCA
LOC_Os06g42150
OsAffx.28062.1.S1_at--938--2871Chr06:25304385..25304409 (25 bp)
AAGTGGCACACCTCTGCCGCAAGAA
LOC_Os06g42150
OsAffx.28062.1.S1_at--683--7531Chr06:25304383..25304407 (25 bp)
GTGGCACACCTCTGCCGCAAGAATG
LOC_Os06g42150
OsAffx.28062.1.S1_at--202--2171Chr06:25304378..25304402 (25 bp)
ACACCTCTGCCGCAAGAATGCGCAC
LOC_Os06g42150
Target Sequence 
GTTGTTGATGGCTTCTTCAAGCGGGAGCAGGGGGAGCGCGGTGTTGGTGGCCGGGGGGGGGGGAGGGTCGTCGACGGCGG
TGGAGGAGGAGCTGAGGGCGCTGATGGAGCAGCGGCGGGCGAAGAGGATGCTATTGAACAGGGAGTCGGCGCGGCGGTCA
CGGATGCGAAAGCAGAGCCACCTCTCGACGACCTCACCGCGCAAGTGGCACACCTCTGCCGCAAGAATGCGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis