Browse Element(s) Details


OsAffx.24777.1.A1_at

Description tigr:9630.m04693
TID=OsAffx.24777.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g421801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42140NANA6+25303129..25303344bZIP transcription factor ATB2, putative
LOC_Os06g42150OsAffx.28062.1.S1_at11/116+25304348..25304641hypothetical protein
LOC_Os06g42160OsAffx.3280.1.S1_x_at1/116+25310355..25311314retrotransposon protein, putative, unclassified
LOC_Os06g42170OsAffx.411.1.S1_at1/116+25316612..25317078retrotransposon protein, putative, unclassified
LOC_Os06g42180OsAffx.28063.1.S1_at11/116+25321423..25323331hypothetical protein
LOC_Os06g42180OsAffx.24777.1.A1_at1/116+25321423..25323331hypothetical protein
LOC_Os06g42190OsAffx.22492.1.S1_at1/116+25327165..25333319retrotransposon protein, putative, unclassified
LOC_Os06g42190OsAffx.22492.1.S1_x_at1/116+25327165..25333319retrotransposon protein, putative, unclassified
LOC_Os06g42200Os.31312.5.S1_x_at5/116+25333947..25337202retrotransposon protein, putative, unclassified
LOC_Os06g42200Os.31312.2.S1_x_at4/116+25333947..25337202retrotransposon protein, putative, unclassified
LOC_Os06g42210OsAffx.26408.1.S1_x_at11/116+25344436..25345337hypothetical protein
LOC_Os06g42210OsAffx.26408.1.S1_at11/116+25344436..25345337hypothetical protein
LOC_Os06g42220Os.54075.1.S1_at11/116+25346189..25347650Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24777.1.A1_at--953--4772Chr12:2090501..2090525 (25 bp)
GCTCCAAAAGTTCAGAGATTTGCTG
NONE
OsAffx.24777.1.A1_at--632--6752Chr12:2090510..2090531 (22 bp)
GTTCAGAGATTTGCTGCAAGCCTGC
NONE
OsAffx.24777.1.A1_at--432--9011Chr02:29466131..29466155 (25 bp)
TGCAAGCCTGCGAGAGAGCGGGTGT
NONE
OsAffx.24777.1.A1_at--517--7751Chr02:29466151..29466175 (25 bp)
GGTGTACGTGTCGATCTCCGGCTAG
NONE
OsAffx.24777.1.A1_at--822--6971Chr02:29466154..29466178 (25 bp)
GTACGTGTCGATCTCCGGCTAGTAG
NONE
OsAffx.24777.1.A1_at--479--1911Chr02:29466156..29466180 (25 bp)
ACGTGTCGATCTCCGGCTAGTAGCC
NONE
OsAffx.24777.1.A1_at--861--7211Chr02:29466160..29466184 (25 bp)
GTCGATCTCCGGCTAGTAGCCGCCG
NONE
OsAffx.24777.1.A1_at--574--9453Chr06:17564698..17564782 (25 bp)
TCGGCGTCGTAGTAGATCACGCCGG
NONE
OsAffx.24777.1.A1_at--496--3952Chr06:17564720..17564744 (25 bp)
CGGAGAAGTCCAGCGGCTGGCACCG
NONE
OsAffx.24777.1.A1_at--344--4611Chr02:29466465..29466489 (25 bp)
GCGACGAGAACGACGCCGCGATCCC
NONE
OsAffx.24777.1.A1_at--246--4071Chr02:29466642..29466666 (25 bp)
CGAGACCTTGATGGCTAGCTTAGCT
NONE
Target Sequence 
GCTCCAAAAGTTCAGAGATTTGCTGCAAGCCTGCGAGAGAGCGGGTGTACGTGTCGATCTCCGGCTAGTAGCCGCCGCCG
CCGCCGGCGTTGGCCGCGAGCTTGATGGACGACGGCAGCGGGCTGCGCAGCGGCGAGCGCGGCGGCGGCGGCTGCTCCAG
GCGCCGCCCCTCGGCGTCGTAGTAGATCACGCCGGAGAAGTCCAGCGGCTGGCACCGCTCCCCCATCAGTATCTCCTTCC
TCCACACCCCGTCCTCCGCGCGGAAGCTCAGCTCCGCCCCGGCCTTCCTCCTCCTCCTCGACGACGAGATAGCCTTCTTC
CCGCCGCCTCCGCCGCCCAGGAACGGCACGATGGCGCGCGACGAGAACGACGCCGCGATCCCCTCCCGCGGCCGCAGGTG
CAGCCGCCGCGCCGCCCGCGACAGCCGCCTCGCGCACGTCCCCATCAGCGCCGCCACCGCCTGCGCGATGCTCATCCCCA
TCGCCGCCGCCGCCGCCTCCTCCTCCTCTCCTCCTCGCGCTCTTGCTTCCTCTTCGAGACCTTGATGGCTAGCTTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24777.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis