Browse Element(s) Details


OsAffx.4041.1.S1_at

Description tigr:9632.m03879
TID=OsAffx.4041.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4081011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40760OsAffx.26409.3.S1_at10/114+23970339..23972164F-box domain containing protein
LOC_Os04g40770OsAffx.26409.1.S1_at10/114+23972914..23976255F-box domain containing protein
LOC_Os04g40780OsAffx.26409.2.S1_at11/114+23980029..23981835F-box domain containing protein
LOC_Os04g40790OsAffx.4039.1.S1_at7/114+23983218..23985589hypothetical protein
LOC_Os04g40800OsAffx.4040.1.S1_at11/114+23987154..23991019F-box domain containing protein
LOC_Os04g40810OsAffx.4041.1.S1_at11/114+23995012..23997246hypothetical protein
LOC_Os04g40820OsAffx.26410.1.S1_at11/114+24004372..24005437hypothetical protein
LOC_Os04g40830Os.52729.1.S1_at11/114+24010153..24017810Cullin family protein, expressed
LOC_Os04g40840Os.17516.1.S1_at11/114+24018045..24021616radical SAM domain-containing protein, putative, expressed
LOC_Os04g40850Os.15236.1.S1_at11/114+24021826..2402467526S proteasome non-ATPase regulatory subunit 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4041.1.S1_at--246--9911Chr04:23996172..23996196 (25 bp)
TACTCGTCTGTGCTAAGGTTGGTCT
LOC_Os04g40810
OsAffx.4041.1.S1_at--2--6631Chr04:23996155..23996179 (25 bp)
GTTGGTCTCCAACAATTCTGATGAG
LOC_Os04g40810
OsAffx.4041.1.S1_at--815--8831Chr04:23996137..23996161 (25 bp)
TGATGAGGACTTTGACCGTGAAGTT
LOC_Os04g40810
OsAffx.4041.1.S1_at--724--6811Chr04:23996115..23996139 (25 bp)
GTTTATAGGCTTGCGCACTTACGGC
LOC_Os04g40810
OsAffx.4041.1.S1_at--786--3311Chr04:23996100..23996124 (25 bp)
CACTTACGGCCACTTGTTTCTAAAG
LOC_Os04g40810
OsAffx.4041.1.S1_at--471--2071Chr04:23996089..23996113 (25 bp)
ACTTGTTTCTAAAGCTGCATCGCAG
LOC_Os04g40810
OsAffx.4041.1.S1_at--164--3551Chr04:23995688..23996096 (25 bp)
CATCGCAGCGTTCTCAAGCAATGGT
LOC_Os04g40810
OsAffx.4041.1.S1_at--1091--10451Chr04:23995655..23995679 (25 bp)
TTACCAATTTTAGCTCCGATGATGA
LOC_Os04g40810
OsAffx.4041.1.S1_at--1126--8871Chr04:23995627..23995651 (25 bp)
TGAGTACAGTTCTGGAGTGCTGGTT
LOC_Os04g40810
OsAffx.4041.1.S1_at--344--791Chr04:23995589..23995613 (25 bp)
ATGTGTTGTGTGATGACTTTTCTGA
LOC_Os04g40810
OsAffx.4041.1.S1_at--332--271Chr04:23995526..23995550 (25 bp)
ATAGGGTCAGTAAGAGAACTCTCAA
LOC_Os04g40810
Target Sequence 
TACTCGTCTGTGCTAAGGTTGGTCTCCAACAATTCTGATGAGGACTTTGACCGTGAAGTTTATAGGCTTGCGCACTTACG
GCCACTTGTTTCTAAAGCTGCATCGCAGCGTTCTCAAGCAATGGTAGATGATTTTACCAATTTTAGCTCCGATGATGAGT
TTGAGTACAGTTCTGGAGTGCTGGTTGATAGTGTTTTTGATGTGTTGTGTGATGACTTTTCTGATGAGGATTTTCAATAT
GAAGAAGTTGATGCAAGGTATTATAGGGTCAGTAAGAGAACTCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis