Browse Element(s) Details


Os.15236.1.S1_at

Description gb:AB037149.1
DB_XREF= gi:17297976
GEN=OsRPN7
TID=Os.15236.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15236 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRPN7 mRNA for 26S proteasome regulatory particle non-ATPase subunit7, complete cds.
PROD=26S proteasome regulatory particle non-ATPasesubunit7
FL= gb:AK104327.1 gb:AB037149.1 gb:AK068887.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4085011/1126S proteasome non-ATPase regulatory subunit 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40810OsAffx.4041.1.S1_at11/114+23995012..23997246hypothetical protein
LOC_Os04g40820OsAffx.26410.1.S1_at11/114+24004372..24005437hypothetical protein
LOC_Os04g40830Os.52729.1.S1_at11/114+24010153..24017810Cullin family protein, expressed
LOC_Os04g40840Os.17516.1.S1_at11/114+24018045..24021616radical SAM domain-containing protein, putative, expressed
LOC_Os04g40850Os.15236.1.S1_at11/114+24021826..2402467526S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os04g40860Os.12079.1.S1_at11/114+24024851..24028652transposon protein, putative, unclassified, expressed
LOC_Os04g40870Os.35089.1.S1_at11/114+24034237..24038366expressed protein
LOC_Os04g40880Os.373.1.S1_s_at11/114+24048790..24051074Nucleotide-binding protein 1, putative, expressed
LOC_Os04g40880Os.56121.1.S1_x_at11/114+24048790..24051074Nucleotide-binding protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000338biological_processprotein deneddylation
GO:0006461biological_processprotein complex assembly
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009640biological_processphotomorphogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15236.1.S1_at--742--2851Chr04:24024007..24024031 (25 bp)
AAGTCCGTACTGTTGTCTATTCACA
LOC_Os04g40850
Os.15236.1.S1_at--897--10191Chr04:24024024..24024048 (25 bp)
TATTCACAATTCCTCGAGTCCTACA
LOC_Os04g40850
Os.15236.1.S1_at--554--5831Chr04:24024105..24024233 (25 bp)
GACCTGGAATTGTCACGCTTCATTG
LOC_Os04g40850
Os.15236.1.S1_at--914--351Chr04:24024261..24024285 (25 bp)
ATAAGGTTGCTTGCGTCCTGGAGAC
LOC_Os04g40850
Os.15236.1.S1_at--122--5591Chr04:24024303..24024327 (25 bp)
GAAATGCTTTCTACCAGGCAACCAT
LOC_Os04g40850
Os.15236.1.S1_at--848--5391Chr04:24024361..24024385 (25 bp)
GAAGCTATCACGAGTCATTGACCTG
LOC_Os04g40850
Os.15236.1.S1_at--297--8091Chr04:24024400..24024424 (25 bp)
GGAGCTGGTGCTTGCCAAAACTCTG
LOC_Os04g40850
Os.15236.1.S1_at--441--7051Chr04:24024444..24024468 (25 bp)
GTAACTTATTTGCTTTGGTCCCAGG
LOC_Os04g40850
Os.15236.1.S1_at--779--5491Chr04:24024476..24024500 (25 bp)
GAACAGTACTTGACTTCGCATTCGA
LOC_Os04g40850
Os.15236.1.S1_at--907--1211Chr04:24024588..24024612 (25 bp)
AGTTCAGACCCGTTGTTTCTAGACT
LOC_Os04g40850
Os.15236.1.S1_at--715--6831Chr04:24024602..24024626 (25 bp)
GTTTCTAGACTCTCTTCTGTGATGA
LOC_Os04g40850
Target Sequence 
AAGTCCGTACTGTTGTCTATTCACAATTCCTCGAGTCCTACAAGAGTGTGACGATGGAAGCAATGGCTTCTGCATTTGGT
GTGACCGTTGATTTCATAGACCTGGAATTGTCACGCTTCATTGCTGCTGGAAAGCTCCACTGCAAGATCGATAAGGTTGC
TTGCGTCCTGGAGACGAACCGGCCTGATGCCAGAAATGCTTTCTACCAGGCAACCATCAAGCAAGGGGACTTCCTGCTGA
ACCGCATCCAGAAGCTATCACGAGTCATTGACCTGTAGGTGTTANTGTTGGAGCTGGTGCTTGCCAAAACTCTGCTCGAG
CTCCCCCGCACGAGTAACTTATTTGCTTTGGTCCCAGGGGACTACGAACAGTACTTGACTTCGCATTCGAAGTAGGTTAC
GAGGAAAGAGAGCTTAACAAAATCAGCGTTAAATCTGAGAATTTGAGCTTATGTAACCTACTATATGGATCGATGAAAGT
TCAGACCCGTTGTTTCTAGACTCTCTTCTGTGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis