Browse Element(s) Details


Os.52729.1.S1_at

Description gb:AK068962.1
DB_XREF= gi:32978986
TID=Os.52729.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169P12, full insert sequence.
FL= gb:AK068962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4083011/11Cullin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40790OsAffx.4039.1.S1_at7/114+23983218..23985589hypothetical protein
LOC_Os04g40800OsAffx.4040.1.S1_at11/114+23987154..23991019F-box domain containing protein
LOC_Os04g40810OsAffx.4041.1.S1_at11/114+23995012..23997246hypothetical protein
LOC_Os04g40820OsAffx.26410.1.S1_at11/114+24004372..24005437hypothetical protein
LOC_Os04g40830Os.52729.1.S1_at11/114+24010153..24017810Cullin family protein, expressed
LOC_Os04g40840Os.17516.1.S1_at11/114+24018045..24021616radical SAM domain-containing protein, putative, expressed
LOC_Os04g40850Os.15236.1.S1_at11/114+24021826..2402467526S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os04g40860Os.12079.1.S1_at11/114+24024851..24028652transposon protein, putative, unclassified, expressed
LOC_Os04g40870Os.35089.1.S1_at11/114+24034237..24038366expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0000151cellular_componentubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52729.1.S1_at--170--3551Chr04:24017063..24017087 (25 bp)
CATCGGGATGCTAACCAATTTTGGA
LOC_Os04g40830
Os.52729.1.S1_at--35--10871Chr04:24017083..24017107 (25 bp)
TTGGAAGCATGACACTGGACCGGAT
LOC_Os04g40830
Os.52729.1.S1_at--580--8511Chr04:24017098..24017122 (25 bp)
TGGACCGGATACACAACACTCTCAA
LOC_Os04g40830
Os.52729.1.S1_at--1095--2791Chr04:24017212..24017235 (24 bp)
AAGATGTTCTGCATAGCCGAGCCAT
LOC_Os04g40830
Os.52729.1.S1_at--138--6071Chr04:24017264..24017288 (25 bp)
GAGTTTTCTTTCTGGTCTAGTGTCA
LOC_Os04g40830
Os.52729.1.S1_at--793--7931Chr04:24017346..24017370 (25 bp)
GGATTAGCCTGTTCATCTGTTAGAC
LOC_Os04g40830
Os.52729.1.S1_at--1002--3111Chr04:24017526..24017550 (25 bp)
AATATTCTGCACTCGCTGTTTTGTT
LOC_Os04g40830
Os.52729.1.S1_at--865--10211Chr04:24017623..24017647 (25 bp)
TATTGCACTGTTGACGCTTGACGAC
LOC_Os04g40830
Os.52729.1.S1_at--339--2291Chr04:24017683..24017707 (25 bp)
AAATGCATATCTTTTCGGTCTGTAA
LOC_Os04g40830
Os.52729.1.S1_at--693--2951Chr04:24017757..24017781 (25 bp)
AATGGCCGGAATGCCTTTTGGCTAC
LOC_Os04g40830
Os.52729.1.S1_at--364--1811Chr04:24017786..24017810 (25 bp)
ACCCTTCGGTGTCAGCTTACTTATC
LOC_Os04g40830
Target Sequence 
CATCGGGATGCTAACCAATTTTGGAAGCATGACACTGGACCGGATACACAACACTCTCAAGATGTTCTGCATAGCCGAGC
CATCATATGATAAATCACTGCAGCAATTGCAGAGTTTTCTTTCTGGTCTAGTGTCAGACGAAAAGCTGGAGATGAGGGAT
GGATCATACTTGCTAAGGAAGTAGGAGTTACATGGATTAGCCTGTTCATCTGTTAGACTAGATATGGAAGGAACTGAAGA
ATGGAGGCCCCATCCTGCGCCATTCACCTCACTGCGTGCAGTAATATTCTGCACTCGCTGTTTTGTTCCTTGCTGAGGGG
ATGACGAAAGTAGAGAAGCACAGGAATCCTAAAGCTTTTGAATGTTGTTATTGTGCGTATATTGCACTGTTGACGCTTGA
CGACGCTCTCAACGCGTTCGGTTGTTTTCCGACGTGGATAAATGCATATCTTTTCGGTCTGTAAATGACAGAAAGAAATT
CAACCAGACTTCTTGGCATTAAATGGCAGGGGCAATGGCCGGAATGCCTTTTGGCTACTGGCACCCTTCGGTGTCAGCTT
ACTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis