Browse Element(s) Details


OsAffx.26410.1.S1_at

Description tigr:9632.m03880
TID=OsAffx.26410.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4082011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40780OsAffx.26409.2.S1_at11/114+23980029..23981835F-box domain containing protein
LOC_Os04g40790OsAffx.4039.1.S1_at7/114+23983218..23985589hypothetical protein
LOC_Os04g40800OsAffx.4040.1.S1_at11/114+23987154..23991019F-box domain containing protein
LOC_Os04g40810OsAffx.4041.1.S1_at11/114+23995012..23997246hypothetical protein
LOC_Os04g40820OsAffx.26410.1.S1_at11/114+24004372..24005437hypothetical protein
LOC_Os04g40830Os.52729.1.S1_at11/114+24010153..24017810Cullin family protein, expressed
LOC_Os04g40840Os.17516.1.S1_at11/114+24018045..24021616radical SAM domain-containing protein, putative, expressed
LOC_Os04g40850Os.15236.1.S1_at11/114+24021826..2402467526S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os04g40860Os.12079.1.S1_at11/114+24024851..24028652transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26410.1.S1_at--826--7831Chr04:24005229..24005253 (25 bp)
GGTAGCGGCATGGAAGCGGATGTGA
LOC_Os04g40820
OsAffx.26410.1.S1_at--1160--6231Chr04:24005247..24005271 (25 bp)
GATGTGAGGGTTGTGTGGCAAGCAC
LOC_Os04g40820
OsAffx.26410.1.S1_at--412--8511Chr04:24005262..24005286 (25 bp)
TGGCAAGCACACAGAGGACACGGCG
LOC_Os04g40820
OsAffx.26410.1.S1_at--783--3231Chr04:24005265..24005289 (25 bp)
CAAGCACACAGAGGACACGGCGACA
LOC_Os04g40820
OsAffx.26410.1.S1_at--1154--2171Chr04:24005279..24005303 (25 bp)
ACACGGCGACAGTCGGAGTGCTGCT
LOC_Os04g40820
OsAffx.26410.1.S1_at--1034--4591Chr04:24005284..24005308 (25 bp)
GCGACAGTCGGAGTGCTGCTAAATC
LOC_Os04g40820
OsAffx.26410.1.S1_at--712--8031Chr04:24005293..24005317 (25 bp)
GGAGTGCTGCTAAATCTATCGTCTA
LOC_Os04g40820
OsAffx.26410.1.S1_at--599--7311Chr04:24005296..24005320 (25 bp)
GTGCTGCTAAATCTATCGTCTATCT
LOC_Os04g40820
OsAffx.26410.1.S1_at--157--4851Chr04:24005301..24005325 (25 bp)
GCTAAATCTATCGTCTATCTTTCTT
LOC_Os04g40820
OsAffx.26410.1.S1_at--342--10171Chr04:24005316..24005340 (25 bp)
TATCTTTCTTCCCTTTGGTGCGCAG
LOC_Os04g40820
OsAffx.26410.1.S1_at--866--3631Chr04:24005323..24005347 (25 bp)
CTTCCCTTTGGTGCGCAGTGAGATT
LOC_Os04g40820
Target Sequence 
GGTAGCGGCATGGAAGCGGATGTGAGGGTTGTGTGGCAAGCACACAGAGGACACGGCGACAGTCGGAGTGCTGCTAAATC
TATCGTCTATCTTTCTTCCCTTTGGTGCGCAGTGAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis