Browse Element(s) Details


OsAffx.15729.1.S1_x_at

Description tigr:9634.m03227
TID=OsAffx.15729.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3429011/11hypothetical protein
LOC_Os09g083501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34220NANA6+19926820..19927721retrotransposon protein, putative, unclassified
LOC_Os06g34230OsAffx.19678.3.A1_at2/116+19930579..19931079hypothetical protein
LOC_Os06g34240OsAffx.435.1.S1_at1/116+19934521..19937636retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g34250NANA6+19938090..19939931hypothetical protein
LOC_Os06g34260OsAffx.27926.1.S1_at11/116+19941281..19942503hypothetical protein
LOC_Os06g34270OsAffx.4998.1.S1_at11/116+19947202..19949049hypothetical protein
LOC_Os06g34280NANA6+19949548..19949978hypothetical protein
LOC_Os06g34290OsAffx.15729.1.S1_at11/116+19951463..19953431hypothetical protein
LOC_Os06g34290OsAffx.15729.1.S1_x_at11/116+19951463..19953431hypothetical protein
LOC_Os06g34300NANA6+19954812..19955737hypothetical protein
LOC_Os06g34310Os.53479.1.S1_x_at2/116+19955919..19960135Zinc knuckle family protein
LOC_Os06g34310OsAffx.15648.1.S1_at1/116+19955919..19960135Zinc knuckle family protein
LOC_Os06g34310Os.25754.2.S1_x_at1/116+19955919..19960135Zinc knuckle family protein
LOC_Os06g34310OsAffx.15536.1.S1_x_at1/116+19955919..19960135Zinc knuckle family protein
LOC_Os06g34320OsAffx.20387.1.S1_x_at2/116+19960878..19965529retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g34330NANA6+19972236..19972514expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15729.1.S1_x_at--346--1418Chr09:4319549..4319572 (24 bp)
AGAAACAGGCGATACCGACGAGATC
LOC_Os09g08350
OsAffx.15729.1.S1_x_at--891--7677Chr07:13481446..13481465 (20 bp)
GGGTTCGACAAGATCTCCCGGCGAG
NONE
OsAffx.15729.1.S1_x_at--635--10411Chr06:19953186..19953210 (25 bp)
TTATATCGTGGAATACCTTAACCTC
LOC_Os06g34290
OsAffx.15729.1.S1_x_at--234--7511Chr06:19953182..19953203 (22 bp)
GTGGAATACCTTAACCTCCAAGCGG
LOC_Os06g34290
OsAffx.15729.1.S1_x_at--254--1151Chr06:19952715..19953200 (25 bp)
GAATACCTTAACCTCCAAGCGGACT
LOC_Os06g34290
OsAffx.15729.1.S1_x_at--403--9971Chr06:19952712..19953197 (25 bp)
TACCTTAACCTCCAAGCGGACTACT
LOC_Os06g34290
OsAffx.15729.1.S1_x_at--1089--1491Chr06:19952698..19952721 (24 bp)
AGCGGACTACTTAACGGAGCCACCT
LOC_Os06g34290
OsAffx.15729.1.S1_x_at--1065--5691Chr06:19952694..19952718 (25 bp)
GACTACTTAACGGAGCCACCTGCAA
LOC_Os06g34290
OsAffx.15729.1.S1_x_at--593--2031Chr06:19952690..19952714 (25 bp)
ACTTAACGGAGCCACCTGCAAAAAT
LOC_Os06g34290
OsAffx.15729.1.S1_x_at--705--9791Chr06:19952687..19952711 (25 bp)
TAACGGAGCCACCTGCAAAAATCTT
LOC_Os06g34290
OsAffx.15729.1.S1_x_at--597--8091Chr06:19952683..19952707 (25 bp)
GGAGCCACCTGCAAAAATCTTATTT
LOC_Os06g34290
Target Sequence 
AGAAACAGGCGATACCGACGAGATCGTGGTCGAGGGGTTCGACAAGATCTCCCGGCGAGTTGGCTCCGTGTACTCCGGCT
TCGTAAACTTTGGTGGGGGTCCCTTTTATATCGTGGAATACCTTAACCTCCAAGCGGACTACTTAACGGAGCCACCTGCA
AAAATCTTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15729.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis