Browse Element(s) Details


Os.12140.1.S1_a_at

Description gb:AK067978.1
DB_XREF= gi:32977996
TID=Os.12140.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123M11, full insert sequence.
FL= gb:AK067978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0839011/11CRAL/TRIO, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08360OsAffx.29763.1.S1_at10/119+4328027..4331178hypothetical protein
LOC_Os09g08370Os.53191.1.S1_at1/119+4337025..4341044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08370OsAffx.4040.1.S1_at1/119+4337025..4341044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08379NANA9+4347090..4347513hypothetical protein
LOC_Os09g08390Os.12140.1.S1_a_at11/119+4348564..4354179CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g08400OsAffx.6205.1.S1_at11/119+4358015..4359123hypothetical protein
LOC_Os09g08410OsAffx.17605.1.S1_at11/119+4377766..4378171hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006656biological_processphosphatidylcholine biosynthesis
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12140.1.S1_a_at--1117--2891Chr09:4349112..4349136 (25 bp)
AAGGTCCGTGATGTTGCCCGTGATC
LOC_Os09g08390
Os.12140.1.S1_a_at--961--10691Chr09:4349099..4349123 (25 bp)
TTGCCCGTGATCATATCTCGTGACG
LOC_Os09g08390
Os.12140.1.S1_a_at--342--231Chr09:4349055..4349079 (25 bp)
ATATTATGCTTATCCATCTCCAGCC
LOC_Os09g08390
Os.12140.1.S1_a_at--1125--7671Chr09:4349013..4349037 (25 bp)
GGGTTATAGCACTCCTTGCTTGCAA
LOC_Os09g08390
Os.12140.1.S1_a_at--853--10711Chr09:4348998..4349022 (25 bp)
TTGCTTGCAATCTCTAGCTGCAGGC
LOC_Os09g08390
Os.12140.1.S1_a_at--492--3831Chr09:4348981..4349005 (25 bp)
CTGCAGGCTTGACTAGGATCCACGA
LOC_Os09g08390
Os.12140.1.S1_a_at--882--2851Chr09:4348899..4348923 (25 bp)
AAGTGTAGCCAGTTCTTTTTCTAAT
LOC_Os09g08390
Os.12140.1.S1_a_at--664--5731Chr09:4348865..4348889 (25 bp)
GACTGTATCATCTGCGACACGTTAC
LOC_Os09g08390
Os.12140.1.S1_a_at--657--2291Chr09:4348811..4348835 (25 bp)
AAATGTGATGTTTCCAGTCCTTCCG
LOC_Os09g08390
Os.12140.1.S1_a_at--899--1111Chr09:4348796..4348820 (25 bp)
AGTCCTTCCGAGTAAGTTGCTGCCC
LOC_Os09g08390
Os.12140.1.S1_a_at--291--8771Chr09:4348753..4348777 (25 bp)
TGTATGTATAGCCTCTAGCTGCCTT
LOC_Os09g08390
Target Sequence 
AAGGTCCGTGATGTTGCCCGTGATCATATCTCGTGACGGAGACGACGATCTGCGGAGATATTATGCTTATCCATCTCCAG
CCCCAGGGAACCTACGGTGGGGTTATAGCACTCCTTGCTTGCAATCTCTAGCTGCAGGCTTGACTAGGATCCACGAGTAG
AAAGAGGTTAGTAATTGTGATGCGATTCTAATAACCGAATCCGTATTATCTGAAAGTGTAGCCAGTTCTTTTTCTAATTA
ACCTAGCGACTGTATCATCTGCGACACGTTACTATTTCAGTGCTTATGGCAACTGGGAAGGAAATGTGATGTTTCCAGTC
CTTCCGAGTAAGTTGCTGCCCTAAATATATATGTAACAGTGTATGTATAGCCTCTAGCTGCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12140.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis