Browse Element(s) Details


OsAffx.29763.1.S1_at

Description tigr:9637.m00607
TID=OsAffx.29763.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0836010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08330OsAffx.29762.1.S1_at11/119+4304471..4305088hypothetical protein
LOC_Os09g08340NANA9+4309675..4314365retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08350OsAffx.15729.1.S1_x_at1/119+4318738..4321411retrotransposon protein, putative, unclassified
LOC_Os09g08350OsAffx.21845.1.S1_at1/119+4318738..4321411retrotransposon protein, putative, unclassified
LOC_Os09g08360OsAffx.29763.1.S1_at10/119+4328027..4331178hypothetical protein
LOC_Os09g08370Os.53191.1.S1_at1/119+4337025..4341044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08370OsAffx.4040.1.S1_at1/119+4337025..4341044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08379NANA9+4347090..4347513hypothetical protein
LOC_Os09g08390Os.12140.1.S1_a_at11/119+4348564..4354179CRAL/TRIO, N-terminus family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29763.1.S1_at--677--9171Chr09:4328081..4328100 (20 bp)
TGCCGCCTCCTAGAGCAAGTTATCG
LOC_Os09g08360
OsAffx.29763.1.S1_at--191--2831NONE
AAGTTATCGCTGTCGTTCTCTTGGT
NONE
OsAffx.29763.1.S1_at--361--9391Chr09:4330065..4330089 (25 bp)
TCGTTCTCTTGGTCGGAGTAGCTTT
LOC_Os09g08360
OsAffx.29763.1.S1_at--1037--2291Chr09:4330092..4330388 (25 bp)
AAATGGTGTTGACTCGACTTCTCGT
LOC_Os09g08360
OsAffx.29763.1.S1_at--566--5691Chr09:4330381..4330403 (23 bp)
GACTTCTCGTTGGTGTTGAGTTACT
LOC_Os09g08360
OsAffx.29763.1.S1_at--617--7391Chr09:4330421..4330445 (25 bp)
GTGATGCATTATTAGAGACCCCAAC
LOC_Os09g08360
OsAffx.29763.1.S1_at--454--2571Chr09:4330449..4330555 (25 bp)
AACTGGACCAGGAAGTGCGCCTCAA
LOC_Os09g08360
OsAffx.29763.1.S1_at--259--2011Chr09:4330568..4330592 (25 bp)
ACACCTAGACGTCTCGAATTTTCAA
LOC_Os09g08360
OsAffx.29763.1.S1_at--113--8151Chr09:4330625..4330649 (25 bp)
GGACACACTATAGTCCCTTTGAGCT
LOC_Os09g08360
OsAffx.29763.1.S1_at--646--9131Chr09:4330696..4331085 (25 bp)
TGCGGAGAATTCAGCTTTATACAAG
LOC_Os09g08360
OsAffx.29763.1.S1_at--638--2771Chr09:4331112..4331136 (25 bp)
AAGAGCCATGGAGGACTTCTTCCTT
LOC_Os09g08360
Target Sequence 
TGCCGCCTCCTAGAGCAAGTTATCGCTGTCGTTCTCTTGGTCGGAGTAGCTTTTGAAATGGTGTTGACTCGACTTCTCGT
TGGTGTTGAGTTACTGGGCCAATGGGATGTTAGTGATGCATTATTAGAGACCCCAACTACAACTGGACCAGGAAGTGCGC
CTCAACAGCACATTCTCACACCTAGACGTCTCGAATTTTCAATGATCAACAATGTAGCTCATTATGATTTTAATGGACAC
ACTATAGTCCCTTTGAGCTGCATAATTCAAGGATCAACACAGAACAATAATAAAACGATTTTTGTTGCGGAGAATTCAGC
TTTATACAAGAATGATTCAGTGAAGGCTATGTGTTCAAGAGCCATGGAGGACTTCTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis