Browse Element(s) Details


OsAffx.21845.1.S1_at

Description gb:NM_189961.1
DB_XREF= gi:34907005
GEN=P0413C03.27
TID=OsAffx.21845.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0413C03.27 (P0413C03.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g083501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08310OsAffx.19542.3.S1_x_at4/119+4292946..4296916retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08320OsAffx.29761.1.S1_at11/119+4298707..4299135NA
LOC_Os09g08320Os.7.1.S1_a_at1/119+4298707..4299135NA
LOC_Os09g08320Os.7.1.S1_x_at1/119+4298707..4299135NA
LOC_Os09g08330OsAffx.29762.1.S1_at11/119+4304471..4305088hypothetical protein
LOC_Os09g08340NANA9+4309675..4314365retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08350OsAffx.15729.1.S1_x_at1/119+4318738..4321411retrotransposon protein, putative, unclassified
LOC_Os09g08350OsAffx.21845.1.S1_at1/119+4318738..4321411retrotransposon protein, putative, unclassified
LOC_Os09g08360OsAffx.29763.1.S1_at10/119+4328027..4331178hypothetical protein
LOC_Os09g08370Os.53191.1.S1_at1/119+4337025..4341044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08370OsAffx.4040.1.S1_at1/119+4337025..4341044retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21845.1.S1_at--367--671Chr01:40382425..40382449 (25 bp)
ATGAAGACAATGCACACCTCAACCT
NONE
OsAffx.21845.1.S1_at--431--3751Chr01:40382402..40382426 (25 bp)
CTCACCAGCGGCAAGATACACGATT
NONE
OsAffx.21845.1.S1_at--515--6471Chr01:40382388..40382412 (25 bp)
GATACACGATTGTTTGCGGACTGGA
NONE
OsAffx.21845.1.S1_at--419--9131Chr01:40382374..40382398 (25 bp)
TGCGGACTGGAGTTAAACCTCTCTA
NONE
OsAffx.21845.1.S1_at--992--2611Chr01:40382359..40382383 (25 bp)
AACCTCTCTACCTCGCAAAGTTGAG
NONE
OsAffx.21845.1.S1_at--358--8891Chr01:40382338..40382362 (25 bp)
TGAGAGGTTATTCTCTCTCACCTGC
NONE
OsAffx.21845.1.S1_at--478--9671Chr01:40382323..40382345 (23 bp)
TCACCTGCCGATTACCAGGAACGGG
NONE
OsAffx.21845.1.S1_at--1103--7637Chr09:4319686..4319706 (21 bp)
GGGTCCCTTTTATACTGTGGACGTG
LOC_Os09g08350
OsAffx.21845.1.S1_at--1111--9911Chr01:40381489..40381513 (25 bp)
TACTGTGGACGTGGATCATCTTGAC
NONE
OsAffx.21845.1.S1_at--734--57511Chr07:16775585..16775607 (23 bp)
GACGTGGATCATCTTGACCCCAAGA
NONE
OsAffx.21845.1.S1_at--670--10751Chr01:40381469..40381493 (25 bp)
TTGACCCCAAGAAAGATATGAGGAT
NONE
Target Sequence 
ATGAAGACAATGCACACCTCAACCTCACCAGCGGCAAGATACACGATTGTTTGCGGACTGGAGTTAAACCTCTCTACCTC
GCAAAGTTGAGAGGTTATTCTCTCTCACCTGCCGATTACCAGGAACGGGGTCCCTTTTATACTGTGGACGTGGATCATCT
TGACCCCAAGAAAGATATGAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis