Browse Element(s) Details


OsAffx.29761.1.S1_at

Description tigr:9637.m00603
TID=OsAffx.29761.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0832011/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08254OsAffx.29760.1.S1_at11/119+4272509..4274876hypothetical protein
LOC_Os09g08254OsAffx.6202.1.S1_at11/119+4272509..4274876hypothetical protein
LOC_Os09g08270OsAffx.6203.1.S1_at11/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08270OsAffx.6203.1.S1_x_at11/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08270OsAffx.29764.1.S1_x_at1/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08280Os.50139.1.S1_at11/119+4276193..4276778expressed protein
LOC_Os09g08290OsAffx.6204.1.S1_at11/119+4285895..4287615hypothetical protein
LOC_Os09g08300OsAffx.17604.1.S1_at11/119+4289126..4290626expressed protein
LOC_Os09g08310OsAffx.19542.3.S1_x_at4/119+4292946..4296916retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08320OsAffx.29761.1.S1_at11/119+4298707..4299135NA
LOC_Os09g08320Os.7.1.S1_a_at1/119+4298707..4299135NA
LOC_Os09g08320Os.7.1.S1_x_at1/119+4298707..4299135NA
LOC_Os09g08330OsAffx.29762.1.S1_at11/119+4304471..4305088hypothetical protein
LOC_Os09g08340NANA9+4309675..4314365retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08350OsAffx.15729.1.S1_x_at1/119+4318738..4321411retrotransposon protein, putative, unclassified
LOC_Os09g08350OsAffx.21845.1.S1_at1/119+4318738..4321411retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29761.1.S1_at--244--3751Chr09:4298737..4298761 (25 bp)
CTCAATGATTTTCAGAAGTATGCCT
LOC_Os09g08320
OsAffx.29761.1.S1_at--247--6551Chr09:4298743..4298767 (25 bp)
GATTTTCAGAAGTATGCCTGTCCAT
LOC_Os09g08320
OsAffx.29761.1.S1_at--68--171Chr09:4298744..4298768 (25 bp)
ATTTTCAGAAGTATGCCTGTCCATT
LOC_Os09g08320
OsAffx.29761.1.S1_at--1022--591Chr09:4298756..4298777 (22 bp)
ATGCCTGTCCATTTTTGCATGGGAA
LOC_Os09g08320
OsAffx.29761.1.S1_at--751--4471Chr09:4298758..4299061 (25 bp)
GCCTGTCCATTTTTGCATGGGAAGT
LOC_Os09g08320
OsAffx.29761.1.S1_at--698--4271Chr09:4298759..4299062 (25 bp)
CCTGTCCATTTTTGCATGGGAAGTT
LOC_Os09g08320
OsAffx.29761.1.S1_at--287--7271Chr09:4298762..4299065 (25 bp)
GTCCATTTTTGCATGGGAAGTTAAC
LOC_Os09g08320
OsAffx.29761.1.S1_at--355--10311Chr09:4298767..4299070 (25 bp)
TTTTTGCATGGGAAGTTAACTGTTG
LOC_Os09g08320
OsAffx.29761.1.S1_at--312--9051Chr09:4298771..4299074 (25 bp)
TGCATGGGAAGTTAACTGTTGGAAA
LOC_Os09g08320
OsAffx.29761.1.S1_at--1138--6751Chr09:4299060..4299084 (25 bp)
GTTAACTGTTGGAAATGATCACTGT
LOC_Os09g08320
OsAffx.29761.1.S1_at--752--6611Chr09:4299067..4299091 (25 bp)
GTTGGAAATGATCACTGTTCCTTCA
LOC_Os09g08320
Target Sequence 
CTCAATGATTTTCAGAAGTATGCCTGTCCATTTTTGCATGGGAAGTTAACTGTTGGAAATGATCACTGTTCCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis