Browse Element(s) Details


OsAffx.6202.1.S1_at

Description tigr:9637.m00596
TID=OsAffx.6202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0825411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08190OsAffx.17601.1.S1_s_at11/119+4249758..4250916Sulfotransferase domain containing protein, expressed
LOC_Os09g08200OsAffx.17602.1.S1_at11/119+4252328..4254929hypothetical protein
LOC_Os09g08210OsAffx.17603.1.S1_at11/119+4256077..4257021hypothetical protein
LOC_Os09g08224OsAffx.22722.1.S1_x_at1/119+4260796..4266702retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08240OsAffx.1647.1.S1_at1/119+4267223..4270181retrotransposon protein, putative, unclassified
LOC_Os09g08240OsAffx.20565.1.S1_at1/119+4267223..4270181retrotransposon protein, putative, unclassified
LOC_Os09g08254OsAffx.29760.1.S1_at11/119+4272509..4274876hypothetical protein
LOC_Os09g08254OsAffx.6202.1.S1_at11/119+4272509..4274876hypothetical protein
LOC_Os09g08270OsAffx.6203.1.S1_at11/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08270OsAffx.6203.1.S1_x_at11/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08270OsAffx.29764.1.S1_x_at1/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08280Os.50139.1.S1_at11/119+4276193..4276778expressed protein
LOC_Os09g08290OsAffx.6204.1.S1_at11/119+4285895..4287615hypothetical protein
LOC_Os09g08300OsAffx.17604.1.S1_at11/119+4289126..4290626expressed protein
LOC_Os09g08310OsAffx.19542.3.S1_x_at4/119+4292946..4296916retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08320OsAffx.29761.1.S1_at11/119+4298707..4299135NA
LOC_Os09g08320Os.7.1.S1_a_at1/119+4298707..4299135NA
LOC_Os09g08320Os.7.1.S1_x_at1/119+4298707..4299135NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6202.1.S1_at--32--6811Chr09:4272542..4272562 (21 bp)
GTTTTGCTAATGTTGGGCCTGATAT
LOC_Os09g08254
OsAffx.6202.1.S1_at--242--6631Chr09:4272553..4272729 (25 bp)
GTTGGGCCTGATATGCCACTGCTTA
LOC_Os09g08254
OsAffx.6202.1.S1_at--5--252Chr09:4272715..4272739 (25 bp)
ATATGCCACTGCTTACCCCTTAGAT
LOC_Os09g08254
OsAffx.6202.1.S1_at--734--1531Chr09:4272956..4272980 (25 bp)
AGCATGGCGCGGTGAACCTCCTCGT
LOC_Os09g08254
OsAffx.6202.1.S1_at--38--7111Chr09:4272979..4273003 (25 bp)
GTCAGCGGCGCTGTCCTTCCATGGG
LOC_Os09g08254
OsAffx.6202.1.S1_at--1014--8391Chr09:4273003..4273027 (25 bp)
GGCGCTTGCTCCTTCCATGTGGCGC
LOC_Os09g08254
OsAffx.6202.1.S1_at--258--9231Chr09:4273016..4273040 (25 bp)
TCCATGTGGCGCTCGCGCTTGTGGC
LOC_Os09g08254
OsAffx.6202.1.S1_at--93--4151Chr09:4273061..4273085 (25 bp)
CGCGGTGCGAGCTCCTGGGATTCCT
LOC_Os09g08254
OsAffx.6202.1.S1_at--490--1791Chr09:4273112..4273136 (25 bp)
ACCGCGCTTCGGTGACACGACTCGT
LOC_Os09g08254
OsAffx.6202.1.S1_at--706--8951Chr09:4273124..4273148 (25 bp)
TGACACGACTCGTCACTAGGCTTCG
LOC_Os09g08254
OsAffx.6202.1.S1_at--521--4111Chr09:4273157..4273181 (25 bp)
CGAACACGTTCATGCGACGGCGCCG
LOC_Os09g08254
Target Sequence 
GTTTTGCTAATGTTGGGCCTGATATGCCACTGCTTACCCCTTAGATGCATTTCCAATAAATTTTGGACCAAATTGCCCTT
CTCTCTTCTTCTTCTTCCTTCCTCCCCTTCTCCTTTCTTCTTGCTCGACGACGGCGGTGGAGCAGCAGGAGCAGCGGGGA
CGGCGGCGCGAGTGGCAGCAGCGAGCAGCGGCGGAGCTAGCGGCAACAGTGAGGGCGGCAGAGCAAGCTACGGCGCGCGG
CAGCAGGGACAGCGGCGGGAACAGCATGGCGCGGTGAACCTCCTCGTCAGCGGCGCTGTCCTTCCATGGGGCGCTTGCTC
CTTCCATGTGGCGCTCGCGCTTGTGGCCGACGGTGCGCCGGGTGAGACGCGGTGCGAGCTCCTGGGATTCCTCGGTTCGC
CGTCGCTCGCCGAGCTTCACCGCGCTTCGGTGACACGACTCGTCACTAGGCTTCGCCACCTGCCGAACACGTTCATGCGA
CGGCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis