Browse Element(s) Details


OsAffx.29762.1.S1_at

Description tigr:9637.m00604
TID=OsAffx.29762.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0833011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08290OsAffx.6204.1.S1_at11/119+4285895..4287615hypothetical protein
LOC_Os09g08300OsAffx.17604.1.S1_at11/119+4289126..4290626expressed protein
LOC_Os09g08310OsAffx.19542.3.S1_x_at4/119+4292946..4296916retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08320OsAffx.29761.1.S1_at11/119+4298707..4299135NA
LOC_Os09g08320Os.7.1.S1_a_at1/119+4298707..4299135NA
LOC_Os09g08320Os.7.1.S1_x_at1/119+4298707..4299135NA
LOC_Os09g08330OsAffx.29762.1.S1_at11/119+4304471..4305088hypothetical protein
LOC_Os09g08340NANA9+4309675..4314365retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08350OsAffx.15729.1.S1_x_at1/119+4318738..4321411retrotransposon protein, putative, unclassified
LOC_Os09g08350OsAffx.21845.1.S1_at1/119+4318738..4321411retrotransposon protein, putative, unclassified
LOC_Os09g08360OsAffx.29763.1.S1_at10/119+4328027..4331178hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29762.1.S1_at--140--4011Chr09:4304615..4304639 (25 bp)
CGTGCCCACCGGTGGGATCAGGATA
LOC_Os09g08330
OsAffx.29762.1.S1_at--833--4531Chr09:4304618..4304642 (25 bp)
GCCCACCGGTGGGATCAGGATACAC
LOC_Os09g08330
OsAffx.29762.1.S1_at--926--4171Chr09:4304619..4304643 (25 bp)
CCCACCGGTGGGATCAGGATACACA
LOC_Os09g08330
OsAffx.29762.1.S1_at--26--4371Chr09:4304620..4304644 (25 bp)
CCACCGGTGGGATCAGGATACACAT
LOC_Os09g08330
OsAffx.29762.1.S1_at--1037--1771Chr09:4304622..4304646 (25 bp)
ACCGGTGGGATCAGGATACACATGA
LOC_Os09g08330
OsAffx.29762.1.S1_at--686--7951Chr09:4304635..4304659 (25 bp)
GGATACACATGATGAGGTCGTTGCT
LOC_Os09g08330
OsAffx.29762.1.S1_at--637--6471Chr09:4304636..4304660 (25 bp)
GATACACATGATGAGGTCGTTGCTC
LOC_Os09g08330
OsAffx.29762.1.S1_at--1033--331Chr09:4304637..4304661 (25 bp)
ATACACATGATGAGGTCGTTGCTCT
LOC_Os09g08330
OsAffx.29762.1.S1_at--908--9851Chr09:4304638..4304662 (25 bp)
TACACATGATGAGGTCGTTGCTCTA
LOC_Os09g08330
OsAffx.29762.1.S1_at--767--1031Chr09:4304649..4304673 (25 bp)
AGGTCGTTGCTCTACTCAAGGCGCA
LOC_Os09g08330
OsAffx.29762.1.S1_at--227--7811Chr09:4304650..4304674 (25 bp)
GGTCGTTGCTCTACTCAAGGCGCAT
LOC_Os09g08330
Target Sequence 
CGTGCCCACCGGTGGGATCAGGATACACATGATGAGGTCGTTGCTCTACTCAAGGCGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis