Browse Element(s) Details


Os.12702.1.S1_at

Description gb:AK100320.1
DB_XREF= gi:32985529
TID=Os.12702.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079D17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079D17, full insert sequence.
FL= gb:AK100320.1 gb:AK062213.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2189011/11PTEN, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21840NANA12+12296279..12296542hypothetical protein
LOC_Os12g21850OsAffx.7652.1.S1_at11/1112+12300816..12301400SRF-type transcription factor family protein, expressed
LOC_Os12g21860OsAffx.19765.1.S1_at10/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.43072.1.S1_at2/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.43072.1.S1_x_at2/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.19410.2.S1_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860OsAffx.3097.1.S1_x_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.12010.1.S1_x_at1/1112+12303451..12308348expressed protein
LOC_Os12g21860Os.53191.1.S1_at1/1112+12303451..12308348expressed protein
LOC_Os12g21870Os.17137.1.S1_at11/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870OsAffx.19766.1.S1_x_at11/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870OsAffx.19766.1.S1_at4/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870Os.23947.1.A1_at3/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21870Os.27627.1.S1_at1/1112+12310045..12315681intron maturase, type II family protein, putative, expressed
LOC_Os12g21880OsAffx.19767.1.S1_x_at11/1112+12316858..12317606SRF-type transcription factor family protein
LOC_Os12g21890Os.23947.1.A1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.12702.1.S1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890OsAffx.19766.1.S1_x_at7/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.17137.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.27627.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21900Os.56089.1.S1_at1/1112+12331075..12332472retrotransposon protein, putative, unclassified
LOC_Os12g21910NANA12+12333606..12338741retrotransposon protein, putative, unclassified
LOC_Os12g21920OsAffx.19768.1.S1_at10/1112+12341793..12342834hypothetical protein
LOC_Os12g21930Os.54668.1.S1_at9/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21930Os.25308.1.A1_at1/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21940Os.54717.1.S1_at11/1112+12351717..12354198expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0016791molecular_functionphosphoric monoester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12702.1.S1_at--1103--8871Chr12:12319539..12319563 (25 bp)
TGAGGGTACTACTAATGCTGCAAAA
LOC_Os12g21890
Os.12702.1.S1_at--483--5311Chr12:12319432..12319456 (25 bp)
GAAGTGCAAGGACACCTGATGCTGC
LOC_Os12g21890
Os.12702.1.S1_at--806--4771Chr12:12319343..12319367 (25 bp)
GCTGCTGACTCCAGCATGAGCGAGT
LOC_Os12g21890
Os.12702.1.S1_at--492--931Chr12:12319315..12319339 (25 bp)
AGGCAATTGCTGCAGACGCTTCGGT
LOC_Os12g21890
Os.12702.1.S1_at--1030--10611Chr12:12319296..12319320 (25 bp)
TTCGGTCTTCTCGTTCGGAGATGAA
LOC_Os12g21890
Os.12702.1.S1_at--871--331Chr12:12319254..12319278 (25 bp)
ATAATTCACACCCTTTTGTGGGCGC
LOC_Os12g21890
Os.12702.1.S1_at--32--4171Chr12:12319232..12319256 (25 bp)
CGCCTGGTTCGCCATTGTATAGTTT
LOC_Os12g21890
Os.12702.1.S1_at--162--1211Chr12:12319212..12319236 (25 bp)
AGTTTGGTGCTTTCCAGATCATGAT
LOC_Os12g21890
Os.12702.1.S1_at--32--10731Chr12:12319145..12319169 (25 bp)
TTGCTTTGTTCTACCGTTTTATGTT
LOC_Os12g21890
Os.12702.1.S1_at--1071--10111Chr12:12319126..12319150 (25 bp)
TATGTTTCATTGTAGCCCTTTTTCA
LOC_Os12g21890
Os.12702.1.S1_at--474--1411Chr12:12319055..12319079 (25 bp)
AGAACTTTGTTGATACTTCGCTTAT
LOC_Os12g21890
Target Sequence 
TGAGGGTACTACTAATGCTGCAAAAGCGTCTGAAACAAGCTCTGTGCAAAAGGAGGCGTCTGCTGCTGCTTCCAGAATTG
AAAAAGTATCAATAACCAGCGAACAAGGAAGTGCAAGGACACCTGATGCTGCNACCTCTCAAAAGTGGAGTTAGCAGCAA
GAGCAGCTCCACCACAGCACCACCACCACCCCCAGCGGCTGCTGACTCCAGCATGAGCGAGTTCAAGGCAATTGCTGCAG
ACGCTTCGGTCTTCTCGTTCGGAGATGAAGACGACTATGAAAGCGAATAATTCACACCCTTTTGTGGGCGCCTGGTTCGC
CATTGTATAGTTTGGTGCTTTCCAGATCATGATAGGATACCACCTGGAAGCAACAGGTAGAAAAGATGAAAAGAATTGCT
TTGTTCTACCGTTTTATGTTTCATTGTAGCCCTTTTTCAAGCTGTAATGTTGTACAATGGTGAACTTTGTAACTCCAAAA
ATGTCAGAACTTTGTTGATACTTCGCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis