Browse Element(s) Details


OsAffx.3097.1.S1_x_at

Description tigr:9630.m05778
TID=OsAffx.3097.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to plasma membrane H+ ATPase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g579209/11Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g209803/11hypothetical protein
LOC_Os12g218601/11expressed protein
LOC_Os01g296101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57850Os.11920.1.S1_s_at1/112+35420449..35421472hypothetical protein
LOC_Os02g57860Os.23627.1.A1_at6/112+35425163..35426971F-box domain containing protein, expressed
LOC_Os02g57870Os.23608.1.S1_at11/112+35427793..35429999expressed protein
LOC_Os02g57880Os.23175.1.S1_at2/112+35431872..35433039hypothetical protein
LOC_Os02g57890Os.53591.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57890OsAffx.3098.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57900OsAffx.12685.1.S1_at9/112+35437471..35441000hypothetical protein
LOC_Os02g57900Os.53104.1.S1_at2/112+35437471..35441000hypothetical protein
LOC_Os02g57900OsAffx.18815.1.S1_x_at1/112+35437471..35441000hypothetical protein
LOC_Os02g57910Os.23175.1.S1_at11/112+35441874..35444096F-box domain containing protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_s_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.38248.1.S1_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_x_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_x_at9/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_at8/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_x_at4/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_x_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57930Os.27691.1.S1_x_at4/112+35460748..35466204retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g57940Os.53591.1.S1_at11/112+35476075..35478087F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009935biological_processnutrient import
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3097.1.S1_x_at--847--4511Chr02:35448912..35448936 (25 bp)
GCCGCAGCTGGAGCCAAGGCCGAAA
LOC_Os02g57920
OsAffx.3097.1.S1_x_at--948--5411Chr02:35448885..35448909 (25 bp)
GAAGCCGAAGCTGGTGGCAATGTCA
LOC_Os02g57920
OsAffx.3097.1.S1_x_at--1008--751Chr02:35448866..35448890 (25 bp)
ATGTCAGCGGTAAGCAGAGCACAGC
LOC_Os02g57920
OsAffx.3097.1.S1_x_at--848--9051NONE
TGCATCCCGGTTTGACACCTTTGGA
NONE
OsAffx.3097.1.S1_x_at--921--5635Chr04:4738903..4738927 (25 bp)
GACACCTTTGGATTGCATACCAGAA
NONE
OsAffx.3097.1.S1_x_at--702--3133Chr12:12305024..12305051 (25 bp)
AATTTTCCATGTTCAGCTCGCAATA
LOC_Os12g21860
OsAffx.3097.1.S1_x_at--268--9751NONE
TAATTCATCTTCAGCAACCATGCGG
NONE
OsAffx.3097.1.S1_x_at--114--7491Chr02:35446871..35446895 (25 bp)
GTGGTTTGTAATCCAGCTAGCAAGC
LOC_Os02g57920
OsAffx.3097.1.S1_x_at--75--6752Chr02:35446743..35446767 (25 bp)
GTTCATATGTATGTTGTGCAGGCAA
LOC_Os02g57920
OsAffx.3097.1.S1_x_at--845--10812Chr02:35446730..35446754 (25 bp)
TTGTGCAGGCAATAGCTCTCTTGAA
LOC_Os02g57920
OsAffx.3097.1.S1_x_at--30--6732Chr02:35446703..35446727 (25 bp)
GTTCTCACAGCCTTACAGATCAGTA
LOC_Os02g57920
Target Sequence 
GCCGCAGCTGGAGCCAAGGCCGAAAAAGAAGCCGAAGCTGGTGGCAATGTCAGCGGTAAGCAGAGCACAGCAGGGGAGGG
GAGGGGCGCCGTGGTCCTGCTGCATCCCGGTTTGACACCTTTGGATTGCATACCAGAATTTTCCATGTTCAGCTCGCAAT
AATTCATCTTCAGCAACCATGCGGTCGGTGGAAAACAATTAGAGGTGCAGTGTGGAGTGGTTTGTAATCCAGCTAGCAAG
CTTATGCGCACTCAAGATGAAGGAAGGGGATGATGCAATTTGGAGCACCTCTTTCTGACCAGATGGACTCAGTTTTCACG
GGCCCAGGAACTAATGAAAAATTGGTTCATATGTATGTTGTGCAGGCAATAGCTCTCTTGAAAGGTTCTCACAGCCTTAC
AGATCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3097.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis